Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MKZ16_RS16330 Genome accession   NZ_CP150225
Coordinates   3637866..3639617 (-) Length   583 a.a.
NCBI ID   WP_076105747.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R5-0928     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3632866..3644617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ16_RS16315 (MKZ16_16315) - 3633416..3634351 (+) 936 WP_038571187.1 carbohydrate ABC transporter permease -
  MKZ16_RS16320 (MKZ16_16320) - 3634442..3636004 (+) 1563 WP_076105745.1 ABC transporter substrate-binding protein -
  MKZ16_RS16325 (MKZ16_16325) rcrQ 3636106..3637866 (-) 1761 WP_076105746.1 ABC transporter ATP-binding protein Regulator
  MKZ16_RS16330 (MKZ16_16330) rcrP 3637866..3639617 (-) 1752 WP_076105747.1 ABC transporter ATP-binding protein Regulator
  MKZ16_RS16335 (MKZ16_16335) - 3639737..3640792 (-) 1056 WP_080742500.1 HAMP domain-containing sensor histidine kinase -
  MKZ16_RS16340 (MKZ16_16340) - 3640789..3641463 (-) 675 WP_076105748.1 response regulator transcription factor -
  MKZ16_RS16345 (MKZ16_16345) - 3641788..3642753 (+) 966 WP_076105749.1 aldo/keto reductase -
  MKZ16_RS16350 (MKZ16_16350) - 3642790..3643641 (+) 852 WP_076105750.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64002.55 Da        Isoelectric Point: 7.7377

>NTDB_id=966923 MKZ16_RS16330 WP_076105747.1 3637866..3639617(-) (rcrP) [Paenibacillus sp. FSL R5-0928]
MVTILKYLKPKEWTLIGISILFIVTQVWLDLELPGYMSEITRLVQIPGSEMSEIIAAGGWMLLCALGSLATSIIVAGIAA
KIAANFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAMLKITGKSWQWSLA
TGVAIGVLILIVGIVIVLVLPKFQKLQQLTDNLNRVARENLTGLRVIRAYNAESYQEDKFSVANSELTRTNLFANNVLSM
MMPSISLIMSGLSLAIYWIGAILIQNANGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLENGSLTTSKTNRLGEVEFKKVSFKYPDAEEYVIEDISFTVKKGETVAFIGSTGCGKSTVVNLIPRFYDATAGEVLVD
GINVNQYEQTALRNKMGYVSQKAILFGGTVSSNVAFGDNGSDLSSDVVDAIYTSQASDFVEKMEGSYEAHVSQGGTNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKKSSGTTILIVAQRIGTIKDADKIIVLEAGRMAGMGTHD
ELMQTCDVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=966923 MKZ16_RS16330 WP_076105747.1 3637866..3639617(-) (rcrP) [Paenibacillus sp. FSL R5-0928]
ATGGTAACTATACTTAAGTACTTAAAACCGAAGGAATGGACCCTAATCGGTATCAGCATCCTGTTCATTGTCACACAGGT
ATGGCTGGATCTGGAATTGCCCGGTTATATGAGCGAGATTACTCGTCTTGTACAGATACCAGGAAGTGAAATGAGCGAAA
TCATTGCAGCCGGAGGCTGGATGTTGCTCTGTGCTCTCGGCAGCTTAGCTACATCAATCATAGTGGCAGGGATCGCCGCT
AAAATTGCCGCTAACTTCTCTTCAAGATTACGCTCCAAATTGTTTGATAAGGTACAATCTTTTTCTATGGAAGAAATCAA
CAACTTCTCTACAGCTAGTTTAATTACCCGTTCGACGAATGACATTACGCAAGTGCAAATGCTGATTGTCATTGGTCTGC
AACTGCTGGTGAAGGCTCCCATCCTTGCCGTTTGGGCAATGCTCAAAATTACAGGCAAGAGTTGGCAGTGGTCGCTTGCT
ACCGGTGTCGCCATTGGGGTATTGATTCTTATTGTCGGCATAGTGATCGTGCTTGTGCTTCCGAAATTCCAAAAATTGCA
GCAACTGACTGATAATCTTAATCGTGTTGCAAGAGAGAATCTTACAGGCCTTCGTGTCATTCGTGCTTATAATGCGGAAA
GTTACCAGGAAGATAAATTTAGCGTAGCCAACAGCGAGCTTACCCGAACGAATTTATTTGCCAACAATGTACTGTCCATG
ATGATGCCAAGTATTTCTCTCATTATGAGCGGTTTAAGTCTCGCAATATATTGGATTGGTGCTATTTTAATTCAAAATGC
CAATGGTACGGCGAAGATGGGCTTATTTTCAGATATGATTGTCTTCTCATCCTATGCGATGCAGGTGGTTATGGCATTCA
TGATGCTGATCATGATTTTTATCCTGATGCCTCGTGCCCATGTATCCGCTAAAAGAATCAATGAAGTGTTGGATACTAAG
CCAAGCTTAGAGAACGGATCACTTACTACCTCCAAGACAAATCGGTTGGGTGAAGTCGAATTCAAAAAAGTCAGCTTTAA
ATATCCGGATGCAGAAGAATACGTTATTGAGGATATCAGCTTTACGGTGAAAAAAGGAGAAACTGTGGCCTTCATCGGTT
CAACCGGATGCGGAAAAAGTACTGTAGTGAACCTGATCCCTCGCTTTTATGATGCTACAGCAGGTGAAGTGTTGGTGGAC
GGTATTAATGTTAACCAATATGAGCAAACTGCACTGCGCAATAAAATGGGATATGTATCTCAGAAAGCGATTTTGTTTGG
CGGCACGGTGAGCTCTAATGTTGCTTTTGGCGACAATGGCAGTGATCTGTCCTCTGATGTTGTAGATGCCATTTACACCT
CTCAAGCTTCAGATTTTGTTGAAAAGATGGAAGGAAGCTACGAGGCTCATGTCTCTCAAGGCGGTACGAACTTGTCTGGC
GGTCAAAAGCAACGTCTTTCCATTGCCCGAGCCATTGCCCGTCGTCCTGAAATATTGATCTTCGACGATTCCTTCTCAGC
GCTTGATTATAAGACGGATCGCAAATTGCGTAGTGAATTGAAGAAGAAATCTAGCGGTACGACGATACTAATCGTTGCGC
AGCGGATCGGTACAATCAAAGACGCAGATAAAATCATTGTACTGGAAGCCGGACGAATGGCAGGCATGGGAACACATGAT
GAATTGATGCAGACCTGTGATGTCTACCAAGAGATTGCTTACTCACAACTTTCAAAGGAGGAGCTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-504)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.013

100

0.532

Multiple sequence alignment