Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MKZ16_RS16325 Genome accession   NZ_CP150225
Coordinates   3636106..3637866 (-) Length   586 a.a.
NCBI ID   WP_076105746.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R5-0928     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3631106..3642866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ16_RS16310 (MKZ16_16310) - 3632443..3633402 (+) 960 WP_038574490.1 ABC transporter permease subunit -
  MKZ16_RS16315 (MKZ16_16315) - 3633416..3634351 (+) 936 WP_038571187.1 carbohydrate ABC transporter permease -
  MKZ16_RS16320 (MKZ16_16320) - 3634442..3636004 (+) 1563 WP_076105745.1 ABC transporter substrate-binding protein -
  MKZ16_RS16325 (MKZ16_16325) rcrQ 3636106..3637866 (-) 1761 WP_076105746.1 ABC transporter ATP-binding protein Regulator
  MKZ16_RS16330 (MKZ16_16330) rcrP 3637866..3639617 (-) 1752 WP_076105747.1 ABC transporter ATP-binding protein Regulator
  MKZ16_RS16335 (MKZ16_16335) - 3639737..3640792 (-) 1056 WP_080742500.1 HAMP domain-containing sensor histidine kinase -
  MKZ16_RS16340 (MKZ16_16340) - 3640789..3641463 (-) 675 WP_076105748.1 response regulator transcription factor -
  MKZ16_RS16345 (MKZ16_16345) - 3641788..3642753 (+) 966 WP_076105749.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64483.74 Da        Isoelectric Point: 6.5784

>NTDB_id=966922 MKZ16_RS16325 WP_076105746.1 3636106..3637866(-) (rcrQ) [Paenibacillus sp. FSL R5-0928]
MNKSKEQLNTWSKLLHYCRKYIPVVLIAIISAAIGTVLTLLGPDKLSEMTDLITAGLVTGIDMEAVTSIGLFLVFIYILS
AVLSLVQGLIMSAVTQKVSKNLRADLSRKMNKLPISYYNNSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFTGSII
MMFKTNVIMTITAVVATIIGFGLIAAIMKKSQKYFQSQQEYLGKINGHVEEVYTGHTVVKAYNGESQMRNTFESLNMNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVAVCVVGAVLAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFLDADEMDNESHKERHLKTAAGKVDFEHVQFAYENSDKLVIKDFSAEIKPGQKIAIVGPTGAGKTTLINLLIRFNELK
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVTDKEVEDACKSVGLHHFIQTLSAGYNTILNDK
VNLSTGQKQQLTIARAMLKNAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKEGDILE
SGSHEELLAKNGFYAELYNSQFDQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=966922 MKZ16_RS16325 WP_076105746.1 3636106..3637866(-) (rcrQ) [Paenibacillus sp. FSL R5-0928]
ATGAACAAAAGCAAAGAGCAACTCAACACGTGGAGCAAACTTCTCCACTATTGCAGAAAATATATCCCTGTAGTCCTTAT
AGCTATTATTAGTGCAGCAATCGGTACGGTTCTGACTTTGCTTGGACCGGATAAGCTTTCGGAGATGACAGACTTGATCA
CGGCGGGCCTCGTCACCGGAATTGATATGGAAGCAGTAACTTCTATCGGCCTTTTCCTTGTATTTATCTATATCCTTAGC
GCTGTGTTATCTTTGGTACAAGGATTAATTATGTCCGCAGTTACGCAAAAGGTCTCCAAAAACTTAAGAGCCGATCTCTC
ACGCAAAATGAACAAACTTCCGATTTCTTATTATAATAATTCTACAACCGGTGACATTCTGTCCCGGGTTACCAACGATG
TGGATACGATCGGGCAAGCTTTAAACCAAAGTGTCGGCACACTGGTAACTGCCCTTGCCCTCTTTACGGGATCCATCATC
ATGATGTTCAAAACAAATGTGATCATGACTATTACGGCGGTTGTTGCAACTATCATTGGCTTTGGCCTCATAGCGGCAAT
TATGAAAAAATCCCAAAAGTATTTTCAAAGTCAGCAAGAATACTTAGGGAAAATCAATGGTCATGTGGAGGAAGTATATA
CAGGACATACTGTAGTGAAAGCTTACAATGGTGAATCACAAATGCGCAATACATTTGAATCCCTGAATATGAATCTTAAA
GATAGTGCATTTAAAGCGCAGTTCCTCTCCGGTCTTATGATGCCGATTATGATGTTTATAGGCAATCTAGGTTTTGTGGC
CGTTTGTGTCGTTGGTGCTGTACTTGCTATGAACGGAACGATATCCTTTGGGGTCATTGTTGCCTTTATACTGTATGTCC
GTTACTTTACACAACCGCTCTCTCAGATTGCTCAAGCCGCACAAAGTCTGCAATCAGCTTCCGCAGCAAGCAAACGTGTC
TTTGAGTTCCTCGATGCTGATGAAATGGACAATGAAAGTCATAAAGAAAGACATCTTAAAACTGCAGCGGGCAAAGTGGA
TTTTGAACATGTGCAATTTGCTTATGAAAATTCAGATAAACTTGTGATTAAAGATTTTTCTGCAGAGATTAAGCCTGGGC
AAAAAATTGCTATAGTCGGCCCTACCGGCGCAGGTAAAACTACACTGATAAATCTTCTAATACGGTTTAATGAATTAAAG
GGCGGAGAGATTTATATTGATGATACCCCCATCAGCAGCTTAACAAGAGAAAACATCCATGATCTATTCTGTATGGTCTT
GCAGGACACCTGGCTTTTTGAGGGCACTATCAGGGAAAATCTGGTGTACAACAAAACAGGTGTAACCGATAAAGAAGTTG
AAGATGCTTGTAAGTCGGTAGGCTTGCATCATTTCATTCAGACCTTAAGTGCCGGTTACAATACCATACTAAATGACAAG
GTTAATTTATCCACCGGCCAAAAGCAACAGCTTACCATCGCCCGCGCGATGCTCAAGAATGCTCCAATGCTCATCCTCGA
TGAAGCTACAAGCTCAGTCGATACAAGAACAGAGCTCTTGATTCAGCAGGCAATGGATAAGCTTATGGAAGGAAGAACCT
CCTTTGTGATTGCGCATAGACTCTCAACCATTAAGAACGCCGATGTGATTCTGGTTTTGAAGGAAGGCGATATCCTGGAA
AGCGGCAGCCACGAAGAACTACTTGCCAAAAATGGTTTCTATGCTGAGCTTTATAATAGCCAATTTGATCAAGCCTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.717

99.488

0.544

Multiple sequence alignment