Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACJPHY_RS06335 Genome accession   NZ_CP176424
Coordinates   1347455..1347784 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain IGLPR01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1342455..1352784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJPHY_RS06320 - 1343100..1344050 (+) 951 WP_020750837.1 NAD-dependent epimerase/dehydratase family protein -
  ACJPHY_RS06325 - 1344072..1345112 (+) 1041 WP_371032227.1 glycosyltransferase family 4 protein -
  ACJPHY_RS06330 - 1345267..1347264 (+) 1998 WP_074222801.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ACJPHY_RS06335 comEA/comE1 1347455..1347784 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  ACJPHY_RS06345 - 1348001..1349197 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  ACJPHY_RS06350 uvrB 1349385..1351397 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=966909 ACJPHY_RS06335 WP_003091430.1 1347455..1347784(+) (comEA/comE1) [Pseudomonas aeruginosa strain IGLPR01]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=966909 ACJPHY_RS06335 WP_003091430.1 1347455..1347784(+) (comEA/comE1) [Pseudomonas aeruginosa strain IGLPR01]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCACCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385