Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AABJ90_RS17770 Genome accession   NZ_AP028964
Coordinates   3478817..3479458 (-) Length   213 a.a.
NCBI ID   WP_003244318.1    Uniprot ID   P96686
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3473817..3484458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS17755 (BsubNA05_34350) ydfK 3474320..3475009 (+) 690 WP_015252719.1 DUF554 domain-containing protein -
  AABJ90_RS17760 (BsubNA05_34360) cesA 3475212..3476114 (+) 903 WP_128740058.1 carboxylesterase -
  AABJ90_RS17765 (BsubNA05_34370) ydfJ 3476527..3478701 (-) 2175 WP_128740057.1 MMPL family transporter -
  AABJ90_RS17770 (BsubNA05_34380) vraR 3478817..3479458 (-) 642 WP_003244318.1 two-component system response regulator YdfI Regulator
  AABJ90_RS17775 (BsubNA05_34390) ydfH 3479451..3480674 (-) 1224 WP_128740056.1 two-component system sensor histidine kinase YdfH -
  AABJ90_RS17780 - 3480942..3481085 (+) 144 WP_014478971.1 hypothetical protein -
  AABJ90_RS17785 (BsubNA05_34400) - 3481082..3481261 (+) 180 WP_010886421.1 hypothetical protein -
  AABJ90_RS17790 (BsubNA05_34410) ydfG 3481347..3481790 (+) 444 WP_128740055.1 carboxymuconolactone decarboxylase family protein -
  AABJ90_RS17795 (BsubNA05_34420) ydfF 3481855..3482535 (-) 681 WP_128992442.1 winged helix-turn-helix domain-containing protein -
  AABJ90_RS17800 (BsubNA05_34430) ydfE 3482625..3483248 (+) 624 WP_163131840.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.92 Da        Isoelectric Point: 5.4183

>NTDB_id=96690 AABJ90_RS17770 WP_003244318.1 3478817..3479458(-) (vraR) [Bacillus subtilis strain NA05 = NBRC 116153]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=96690 AABJ90_RS17770 WP_003244318.1 3478817..3479458(-) (vraR) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAAGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCCATCAGAGGAAATGTGCTATTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96686

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362

Multiple sequence alignment