Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   NST45_RS21095 Genome accession   NZ_CP150224
Coordinates   4800214..4801161 (-) Length   315 a.a.
NCBI ID   WP_076104809.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R7-0163     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 4795214..4806161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST45_RS21070 (NST45_21070) - 4795535..4796728 (-) 1194 WP_038569190.1 anti-sigma factor -
  NST45_RS21075 (NST45_21075) - 4796721..4797224 (-) 504 WP_038569189.1 sigma-70 family RNA polymerase sigma factor -
  NST45_RS21080 (NST45_21080) - 4797391..4798395 (-) 1005 WP_280513452.1 siderophore ABC transporter substrate-binding protein -
  NST45_RS21085 (NST45_21085) - 4798518..4799273 (-) 756 WP_038569188.1 ABC transporter ATP-binding protein -
  NST45_RS21090 (NST45_21090) - 4799267..4800211 (-) 945 WP_036681842.1 iron chelate uptake ABC transporter family permease subunit -
  NST45_RS21095 (NST45_21095) ceuB 4800214..4801161 (-) 948 WP_076104809.1 ABC transporter permease Machinery gene
  NST45_RS21100 (NST45_21100) - 4801390..4801650 (-) 261 WP_076297144.1 YqkE family protein -
  NST45_RS21105 (NST45_21105) - 4801742..4802086 (+) 345 WP_036681832.1 helix-turn-helix domain-containing protein -
  NST45_RS21110 (NST45_21110) - 4802104..4802607 (-) 504 WP_036681829.1 GNAT family N-acetyltransferase -
  NST45_RS21115 (NST45_21115) - 4802633..4803475 (-) 843 WP_036681828.1 SDR family oxidoreductase -
  NST45_RS21120 (NST45_21120) - 4803701..4804795 (+) 1095 WP_036681827.1 Xaa-Pro peptidase family protein -
  NST45_RS21125 (NST45_21125) - 4804880..4805845 (-) 966 WP_339823687.1 nitronate monooxygenase family protein -

Sequence


Protein


Download         Length: 315 a.a.        Molecular weight: 34505.71 Da        Isoelectric Point: 10.1461

>NTDB_id=966889 NST45_RS21095 WP_076104809.1 4800214..4801161(-) (ceuB) [Paenibacillus sp. FSL R7-0163]
MKLKYLSLLLIVFSFISLFIGVKNISPLDLFHLTESQAQTLLVSRIPRLAALIIAGVSMSIAGLIMQQLSRNKFVSPTTA
GTMDSAKFGILVSLMLFTGATPMQKLLVAFVFALLGTFIFMRILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKNDLI
QNISSWMLGDFSTIIKGQYELIYISIPLVILAYLFANKFTVAGMGEDFSVNLGMNYKAVVNVGLVIVALISSVVILTVGT
IPFLGLVVPNIVTLYIGDNLKKSLAHTAILGAVFLLFCDILGRLIIYPYEISISLTVGVIGSGLFIYLLMRRKAN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=966889 NST45_RS21095 WP_076104809.1 4800214..4801161(-) (ceuB) [Paenibacillus sp. FSL R7-0163]
ATGAAACTAAAATATTTGTCCCTACTTCTAATAGTATTTTCATTTATTTCTTTGTTTATAGGCGTTAAAAATATATCCCC
ATTAGATCTCTTTCATCTTACAGAATCTCAAGCACAGACCTTGCTGGTAAGCCGGATTCCCCGGTTAGCCGCATTGATTA
TCGCTGGAGTCAGCATGAGTATTGCCGGATTAATTATGCAACAGCTGTCACGCAATAAATTCGTCTCACCGACTACGGCA
GGGACGATGGATTCCGCGAAATTTGGTATTCTCGTATCCCTCATGTTATTCACAGGCGCAACGCCAATGCAGAAATTGCT
TGTTGCTTTTGTTTTTGCACTATTGGGCACCTTTATTTTTATGAGAATCCTGGATCGGATCAAGTTCAAGGATAGTATTT
TTATCCCGCTGGTCGGACTCATGTTCGGAAACATTGTAGGTTCGATTACAACATTTTTTGCGTATAAAAATGATTTGATT
CAGAATATCTCATCTTGGATGCTTGGGGATTTCTCGACGATTATCAAAGGCCAATACGAATTAATTTATATCAGCATTCC
ACTTGTCATTCTGGCGTATCTCTTCGCTAATAAATTTACGGTAGCCGGTATGGGCGAGGATTTTTCCGTCAATCTTGGCA
TGAACTACAAAGCGGTGGTCAACGTGGGATTGGTAATTGTAGCGTTAATCTCTTCTGTTGTCATTTTAACCGTAGGTACG
ATTCCATTTCTGGGTCTAGTAGTACCTAACATTGTAACGTTGTACATAGGGGATAACCTCAAAAAAAGTCTGGCGCATAC
AGCCATTCTCGGAGCGGTGTTCCTCCTGTTCTGCGATATTCTGGGCAGGCTCATTATCTATCCATATGAAATATCAATCA
GTCTCACGGTAGGCGTCATCGGTAGTGGTCTATTTATCTACTTGCTGATGAGAAGAAAGGCGAACTAG

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.051

99.683

0.559


Multiple sequence alignment