Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ACKWPP_RS08415 Genome accession   NZ_CP176418
Coordinates   1660343..1660993 (-) Length   216 a.a.
NCBI ID   WP_409373801.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1655343..1665993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS08410 (ACKWPP_08410) - 1658981..1660342 (-) 1362 WP_409373800.1 ATP-binding protein -
  ACKWPP_RS08415 (ACKWPP_08415) scnR 1660343..1660993 (-) 651 WP_409373801.1 response regulator transcription factor Regulator
  ACKWPP_RS08420 (ACKWPP_08420) ccpA 1662056..1663060 (-) 1005 WP_004298830.1 catabolite control protein A Regulator
  ACKWPP_RS08425 (ACKWPP_08425) - 1663270..1664355 (+) 1086 WP_024386946.1 Xaa-Pro peptidase family protein -
  ACKWPP_RS08430 (ACKWPP_08430) tgt 1664394..1665536 (-) 1143 WP_409373802.1 tRNA guanosine(34) transglycosylase Tgt -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24642.81 Da        Isoelectric Point: 5.1336

>NTDB_id=966869 ACKWPP_RS08415 WP_409373801.1 1660343..1660993(-) (scnR) [Streptococcus suis strain KKAHC02]
MAKILVLEDDLVINQVVCEFLRDSGHDVLPLFYGGQALEEIQKMEFDLLILDIMVPTMTGLELLTAVRKISSVPVLVLTA
LSDEYTQLISFNQDISDFVTKPFSPLVLMKRIENILKVKHVDETIRIGDILIDQQAGYVHVGEQEVQLTKKEYEVFLYLA
KRKGNIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLHLKTVVGRGYQIEEG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=966869 ACKWPP_RS08415 WP_409373801.1 1660343..1660993(-) (scnR) [Streptococcus suis strain KKAHC02]
ATGGCAAAAATTTTAGTATTAGAAGATGATTTAGTTATTAATCAGGTAGTCTGCGAATTTTTAAGAGATAGTGGTCACGA
TGTTTTACCTCTATTTTATGGTGGTCAGGCATTAGAAGAAATTCAGAAAATGGAATTTGATTTGCTTATTTTGGATATTA
TGGTACCAACGATGACAGGATTGGAGTTATTGACAGCGGTCCGAAAAATTTCATCTGTTCCAGTATTGGTTTTGACTGCT
TTAAGCGATGAATATACTCAATTGATTAGCTTTAATCAGGATATAAGTGATTTTGTGACAAAGCCGTTCTCACCTCTTGT
TTTAATGAAGAGAATTGAAAATATTTTAAAAGTAAAACATGTGGATGAGACTATACGGATAGGGGATATACTTATTGATC
AACAGGCTGGCTATGTTCATGTAGGGGAGCAGGAAGTACAGTTAACGAAGAAAGAGTATGAGGTCTTCCTCTACTTGGCA
AAAAGAAAAGGTAATATTGTGAGTCGAGATAATCTAATGATGGGAATTTGGGGGTATACAGAATTGGATAGTCGTGTGTT
AGATAATCATATTAAAAATATTCGTAAAAAGTTGCCTAGCTTACACTTAAAAACGGTAGTTGGTCGTGGTTACCAAATTG
AAGAGGGTTAG

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36.937

100

0.38