Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AABJ90_RS17000 Genome accession   NZ_AP028964
Coordinates   3320869..3321999 (-) Length   376 a.a.
NCBI ID   WP_338382115.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3315869..3326999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS16955 (BsubNA05_32820) cotJC 3315960..3316529 (-) 570 WP_003233850.1 spore coat protein CotJC -
  AABJ90_RS16960 (BsubNA05_32830) cotJB 3316544..3316807 (-) 264 WP_003219491.1 spore coat protein CotJB -
  AABJ90_RS16965 (BsubNA05_32840) cotJA 3316791..3317039 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  AABJ90_RS16970 (BsubNA05_32850) yesF 3317165..3318033 (-) 869 Protein_3335 NAD-dependent epimerase/dehydratase family protein -
  AABJ90_RS16975 (BsubNA05_32860) yesE 3318030..3318473 (-) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  AABJ90_RS16980 (BsubNA05_32870) yezE 3318552..3319136 (-) 585 WP_338382114.1 TetR/AcrR family transcriptional regulator -
  AABJ90_RS16985 (BsubNA05_32880) yeeK 3319253..3319693 (-) 441 WP_015252624.1 spore coat protein YeeK -
  AABJ90_RS16990 (BsubNA05_32890) yeeI 3319827..3320546 (-) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AABJ90_RS16995 (BsubNA05_32900) phrH 3320706..3320879 (-) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  AABJ90_RS17000 (BsubNA05_32910) rapC 3320869..3321999 (-) 1131 WP_338382115.1 response regulator aspartate phosphatase RapH Regulator
  AABJ90_RS17005 (BsubNA05_32930) - 3322161..3323128 (-) 968 Protein_3342 hypothetical protein -
  AABJ90_RS17010 (BsubNA05_32940) - 3323277..3324197 (-) 921 WP_338382116.1 DUF5655 domain-containing protein -
  AABJ90_RS17015 (BsubNA05_32950) - 3324210..3324548 (-) 339 WP_029726615.1 hypothetical protein -
  AABJ90_RS17020 (BsubNA05_32960) - 3324715..3326601 (+) 1887 WP_338382117.1 T7SS effector LXG polymorphic toxin -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43953.26 Da        Isoelectric Point: 5.8599

>NTDB_id=96686 AABJ90_RS17000 WP_338382115.1 3320869..3321999(-) (rapC) [Bacillus subtilis strain NA05 = NBRC 116153]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQRMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLESIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPIVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=96686 AABJ90_RS17000 WP_338382115.1 3320869..3321999(-) (rapC) [Bacillus subtilis strain NA05 = NBRC 116153]
TTGAGTCAAGCCATACCGTCTTCGCGTGTCGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAGGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTCCGGCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAACCTTACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAATCGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATATTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGATTGTGTCTG
ATGAAATTGAGAAAGCCGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAC
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACACTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGATGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTGCGTTTTATCGGAAAGTGCTAAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_7)

(222-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

39.523

100

0.396