Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AABJ90_RS16525 Genome accession   NZ_AP028964
Coordinates   3224336..3225052 (-) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3219336..3230052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS16520 (BsubNA05_31990) hypO 3223531..3224196 (-) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -
  AABJ90_RS16525 (BsubNA05_32000) treR 3224336..3225052 (-) 717 WP_003233679.1 trehalose operon repressor Regulator
  AABJ90_RS16530 (BsubNA05_32010) treC 3225073..3226761 (-) 1689 WP_015252559.1 alpha,alpha-phosphotrehalase -
  AABJ90_RS16535 (BsubNA05_32020) treP 3226832..3228244 (-) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  AABJ90_RS16540 (BsubNA05_32030) - 3228437..3228616 (+) 180 Protein_3249 spore germination protein -
  AABJ90_RS16545 - 3228878..3229150 (+) 273 Protein_3250 spore gernimation protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=96685 AABJ90_RS16525 WP_003233679.1 3224336..3225052(-) (treR) [Bacillus subtilis strain NA05 = NBRC 116153]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=96685 AABJ90_RS16525 WP_003233679.1 3224336..3225052(-) (treR) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAACCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAGTATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416