Detailed information    

insolico Bioinformatically predicted

Overview


Name   xerS   Type   Machinery gene
Locus tag   ACKWPP_RS06065 Genome accession   NZ_CP176418
Coordinates   1160260..1161330 (-) Length   356 a.a.
NCBI ID   WP_105120535.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1155260..1166330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS06040 (ACKWPP_06040) relB 1156466..1156717 (+) 252 WP_029173101.1 type II toxin-antitoxin system RelB family antitoxin -
  ACKWPP_RS06045 (ACKWPP_06045) - 1156701..1156967 (+) 267 WP_109371427.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACKWPP_RS06050 (ACKWPP_06050) braR 1157006..1157674 (+) 669 WP_161949707.1 response regulator transcription factor Regulator
  ACKWPP_RS06055 (ACKWPP_06055) - 1157671..1158612 (+) 942 WP_109371428.1 sensor histidine kinase -
  ACKWPP_RS06060 (ACKWPP_06060) - 1158689..1160197 (+) 1509 WP_024401231.1 phosphoglucomutase -
  ACKWPP_RS06065 (ACKWPP_06065) xerS 1160260..1161330 (-) 1071 WP_105120535.1 tyrosine recombinase XerS Machinery gene
  ACKWPP_RS06070 (ACKWPP_06070) - 1161495..1162001 (-) 507 WP_044681638.1 AAA family ATPase -
  ACKWPP_RS06075 (ACKWPP_06075) - 1162066..1162806 (-) 741 WP_044762198.1 DUF3307 domain-containing protein -
  ACKWPP_RS06080 (ACKWPP_06080) - 1162810..1163478 (-) 669 WP_024401233.1 SatD family protein -
  ACKWPP_RS06085 (ACKWPP_06085) ffh 1163672..1165246 (-) 1575 WP_024401234.1 signal recognition particle protein -
  ACKWPP_RS06090 (ACKWPP_06090) - 1165259..1165591 (-) 333 WP_014735854.1 putative DNA-binding protein -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 41552.80 Da        Isoelectric Point: 9.5642

>NTDB_id=966849 ACKWPP_RS06065 WP_105120535.1 1160260..1161330(-) (xerS) [Streptococcus suis strain KKAHC02]
MRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVSVERIADIPLDILEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENNQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLNYVDKEYQVNLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLHMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=966849 ACKWPP_RS06065 WP_105120535.1 1160260..1161330(-) (xerS) [Streptococcus suis strain KKAHC02]
ATGAGACGCGAGTTATTATTGGAAAAAATTGATCAACTAAAAGAAATTATGCCTTGGTTTGTTCTGGAATATTATCAGTC
AAAATTGGCTGTACCTTACAGTTTTACAACCTTGTACGAATATCTAAAGGAATATCGTCGATTCTTTGAGTGGTTACAAG
ATTCGGATTTGGTATCTGTGGAACGGATTGCTGACATTCCGTTGGATATTCTGGAACATTTGACAAAAAAAGATATGGAA
GCTTTCATTCTTTATCTGCGGGAGCGTCCCTTACTGAACGCCAATACCACGCAGAATGGTGTGTCACAGACCACCATTAA
CCGTACTCTGTCGGCACTTTCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAAAATAATCAGGGCGAGCCCTACTTCT
ACCGGAATGTCATGAAGAAGGTGTCTACAAAGAAGAAGAAGGAAACCTTGGCAGCGCGGGCGGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACCATGGAATTCTTGAACTATGTGGACAAGGAATACCAAGTCAATCTCTCTAAACGTGCCCT
CTCCTCCTTCCAGAAAAATAAGGAGCGGGATTTGGCGATTCTGGCGCTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGATCTTCGAGATGTAAATCTCCATATGATGATTATCGAAGTAACCCGTAAGGGTGGTAAGCGGGACTCG
GTCAATGTGGCTGGGTTTGCTAAGCCCTATCTGGAAGCCTATATGAGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACAGCCTTCTTCCTGTCCGAATACCGTGGTCTACCCAATCGTATCGATGCTTCTTCTATTGAAAAAATGGTTGCCA
AGTACTCTGCGGACTTCAAGATACGCGTAACCCCCCACAAACTCCGTCATACCTTGGCAACTCGTCTCTACGACGCCACC
AAGTCGCAAGTTCTAGTCAGTCATCAGCTGGGCCACGCCAATACCCAGGTCACTGACCTCTACACCCATATCGTCAACGA
TGAGCAGAAAAATGCTCTGGATAAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.865

100

0.829


Multiple sequence alignment