Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   MKY63_RS04280 Genome accession   NZ_CP150223
Coordinates   1015452..1016399 (-) Length   315 a.a.
NCBI ID   WP_036681839.1    Uniprot ID   A0A1R0X0A0
Organism   Paenibacillus sp. FSL R7-0189     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1010452..1021399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY63_RS04255 (MKY63_04255) - 1010772..1011965 (-) 1194 WP_339811636.1 anti-sigma factor -
  MKY63_RS04260 (MKY63_04260) - 1011958..1012461 (-) 504 WP_036681849.1 sigma-70 family RNA polymerase sigma factor -
  MKY63_RS04265 (MKY63_04265) - 1012629..1013633 (-) 1005 WP_282579687.1 siderophore ABC transporter substrate-binding protein -
  MKY63_RS04270 (MKY63_04270) - 1013756..1014511 (-) 756 WP_339811639.1 ABC transporter ATP-binding protein -
  MKY63_RS04275 (MKY63_04275) - 1014505..1015449 (-) 945 WP_036681842.1 iron chelate uptake ABC transporter family permease subunit -
  MKY63_RS04280 (MKY63_04280) ceuB 1015452..1016399 (-) 948 WP_036681839.1 ABC transporter permease Machinery gene
  MKY63_RS04285 (MKY63_04285) - 1016627..1016887 (-) 261 WP_339811644.1 YqkE family protein -
  MKY63_RS04290 (MKY63_04290) - 1016979..1017323 (+) 345 WP_339811647.1 helix-turn-helix domain-containing protein -
  MKY63_RS04295 (MKY63_04295) - 1017341..1017844 (-) 504 WP_076185721.1 GNAT family N-acetyltransferase -
  MKY63_RS04300 (MKY63_04300) - 1017870..1018712 (-) 843 WP_339811649.1 SDR family oxidoreductase -
  MKY63_RS04305 (MKY63_04305) - 1018938..1020032 (+) 1095 WP_076128106.1 Xaa-Pro peptidase family protein -
  MKY63_RS04310 (MKY63_04310) - 1020117..1021082 (-) 966 WP_339811651.1 nitronate monooxygenase family protein -

Sequence


Protein


Download         Length: 315 a.a.        Molecular weight: 34506.70 Da        Isoelectric Point: 10.0525

>NTDB_id=966839 MKY63_RS04280 WP_036681839.1 1015452..1016399(-) (ceuB) [Paenibacillus sp. FSL R7-0189]
MKLKYLSLLLIVFSFISLFIGVKDISPLDLFHLTESQAQTLLVSRIPRLAALIIAGVSMSIAGLIMQQLSRNKFVSPTTA
GTMDSAKFGILVSLMLFTGATPMQKLLVAFVFALLGTFIFMRILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKNDLI
QNISSWMLGDFSTIIKGQYELIYISIPLVILAYLFANKFTVAGMGEDFSVNLGMNYKAVVNVGLVIVALISSVVILTVGT
IPFLGLVVPNIVTLYIGDNLKKSLAHTAILGAVFLLFCDILGRLIIYPYEISISLTVGVIGSGLFIYLLMRRKAN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=966839 MKY63_RS04280 WP_036681839.1 1015452..1016399(-) (ceuB) [Paenibacillus sp. FSL R7-0189]
ATGAAACTAAAATATTTGTCCCTACTTCTAATAGTATTTTCATTTATATCTTTGTTTATAGGCGTTAAAGATATATCCCC
ATTAGATCTCTTTCATCTTACGGAATCTCAAGCACAGACCTTGCTAGTAAGCCGGATTCCCCGGTTAGCCGCATTGATTA
TCGCTGGAGTCAGCATGAGTATTGCCGGATTAATTATGCAACAGCTGTCACGCAATAAATTCGTCTCACCGACTACGGCC
GGGACGATGGATTCCGCAAAATTTGGTATTCTCGTATCCCTCATGTTATTCACAGGCGCAACGCCAATGCAGAAATTGCT
TGTTGCTTTTGTTTTTGCACTATTGGGCACCTTTATTTTTATGAGAATCCTGGATCGGATCAAGTTCAAGGATAGTATTT
TTATCCCGCTGGTCGGACTCATGTTCGGAAACATTGTAGGTTCGATTACAACATTTTTTGCGTATAAAAATGATTTGATT
CAGAATATCTCGTCTTGGATGCTTGGAGATTTCTCAACGATTATCAAAGGCCAATACGAATTAATTTATATCAGCATTCC
ACTTGTCATTCTGGCGTATCTCTTCGCTAATAAATTTACGGTAGCTGGTATGGGCGAGGATTTCTCCGTCAATCTTGGCA
TGAATTACAAAGCGGTTGTCAACGTGGGATTGGTAATTGTAGCGTTAATCTCTTCTGTTGTCATTTTAACCGTAGGTACG
ATTCCATTTCTGGGTCTAGTAGTACCTAACATTGTAACGTTGTACATAGGAGATAACCTCAAAAAAAGTCTGGCGCATAC
AGCCATTCTCGGAGCGGTGTTCCTCCTGTTCTGCGATATTCTGGGCAGGCTCATTATCTATCCATATGAAATATCAATCA
GTCTCACGGTAGGCGTCATCGGTAGTGGTCTGTTTATCTATTTGCTGATGAGAAGAAAGGCGAACTAG

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1R0X0A0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.051

99.683

0.559


Multiple sequence alignment