Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKY23_RS25000 Genome accession   NZ_CP150221
Coordinates   5657132..5658499 (-) Length   455 a.a.
NCBI ID   WP_090924698.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R7-0272     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5652132..5663499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY23_RS24970 (MKY23_24970) ispF 5652200..5652676 (-) 477 WP_154892117.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MKY23_RS24975 (MKY23_24975) ispD 5652673..5653365 (-) 693 WP_090924693.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MKY23_RS24980 (MKY23_24980) - 5653468..5654553 (-) 1086 WP_090924694.1 PIN/TRAM domain-containing protein -
  MKY23_RS24985 (MKY23_24985) - 5654727..5655122 (+) 396 WP_090924695.1 DUF1573 domain-containing protein -
  MKY23_RS24990 (MKY23_24990) pssA 5655269..5656000 (-) 732 WP_090924696.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MKY23_RS24995 (MKY23_24995) disA 5656042..5657118 (-) 1077 WP_090924697.1 DNA integrity scanning diadenylate cyclase DisA -
  MKY23_RS25000 (MKY23_25000) radA 5657132..5658499 (-) 1368 WP_090924698.1 DNA repair protein RadA Machinery gene
  MKY23_RS25005 (MKY23_25005) - 5658790..5661252 (-) 2463 WP_090924699.1 ATP-dependent Clp protease ATP-binding subunit -
  MKY23_RS25010 (MKY23_25010) - 5661448..5662518 (-) 1071 WP_154892124.1 protein arginine kinase -
  MKY23_RS25015 (MKY23_25015) - 5662547..5663065 (-) 519 WP_090924701.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49555.16 Da        Isoelectric Point: 7.0425

>NTDB_id=966800 MKY23_RS25000 WP_090924698.1 5657132..5658499(-) (radA) [Paenibacillus sp. FSL R7-0272]
MAKVKTKFQCTECGYEAPKWYGKCPGCQSWNSMIEETETVVKTQGRNSPLFDSKDKPLPIIDIDSGQEPRVQTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLMLQTSHALTHSGLRVLYVSGEESVKQTKLRADRLGALSPELYVLCETNMERVEEA
VDQIQPHFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPMLVELQALISTTHFPS
PRRMATGIDHHRLNLIIAVLEKRMGMFLQTQDAYLNVAGGVRLDEPAVDLAVAVSIASSLRDVPTKPDDVIFGEIGLTGE
VRAVSRAEQRVKEAAKLGFKRVILPEKSLKGWKHPRGIQLIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=966800 MKY23_RS25000 WP_090924698.1 5657132..5658499(-) (radA) [Paenibacillus sp. FSL R7-0272]
GTGGCCAAAGTAAAAACCAAGTTTCAATGTACGGAATGCGGCTATGAAGCCCCCAAATGGTACGGGAAATGTCCTGGCTG
TCAGTCCTGGAATTCGATGATAGAAGAAACTGAAACGGTAGTCAAAACACAAGGGAGAAATTCTCCTCTGTTTGACAGTA
AAGATAAACCGCTTCCTATCATAGATATAGATAGCGGTCAGGAGCCGCGTGTACAGACTGGAATCGGTGAACTGAACCGT
GTATTGGGCGGCGGCATTGTGCCAGGTTCGCTTGTTCTGGTGGGGGGCGACCCGGGGATCGGAAAATCAACGTTGATGTT
ACAGACTTCTCATGCGTTGACCCACTCGGGGTTGCGGGTTTTATATGTGTCTGGAGAAGAATCCGTAAAGCAGACAAAGC
TGCGCGCAGACCGCCTCGGTGCACTTTCGCCGGAGCTGTATGTGCTCTGTGAAACCAATATGGAGCGGGTTGAGGAAGCG
GTGGATCAGATCCAGCCGCATTTTCTTGTCATCGATTCCATTCAGACCGTATATCTGCCCGAAGTTACCAGCGCACCAGG
AAGTGTAGCACAGGTAAGGGAATGTACGTCCAGATTCATGCGGATTGCGAAAGGCCGAGGCATTGCAACGGTTCTTGTAG
GGCATGTTACCAAAGAAGGTGCCATTGCTGGTCCGCGTATGCTGGAGCATATGGTGGACTGTGTGCTTTATTTCGAAGGA
GAGCGGCATCATACGTATCGTCTCCTTCGTGCGGTGAAGAACCGTTTCGGTTCTACTAACGAGATTGGCATATTTGAAAT
GGGGGAAGATGGCCTTCGTGAAGTCGGTAATCCCTCCGAGTTATTTTTATCTGAACGTCCACTAGGGGTAGCTGGGTCTA
CCGTTGTGGCGAGTATGGAAGGCACACGTCCGATGCTTGTAGAATTACAGGCTTTGATTTCCACGACCCACTTCCCTTCT
CCTAGGCGGATGGCAACAGGTATCGACCATCATCGATTAAATCTAATTATAGCGGTGCTTGAAAAACGCATGGGTATGTT
CCTGCAGACACAGGATGCCTATCTGAACGTGGCTGGTGGGGTGAGGCTGGATGAGCCAGCGGTCGATCTGGCTGTTGCAG
TTAGCATTGCCTCCAGCTTGAGAGATGTGCCAACGAAGCCGGATGATGTCATCTTTGGCGAGATTGGCCTGACCGGTGAA
GTTCGTGCCGTATCCAGGGCAGAACAACGTGTGAAAGAAGCCGCGAAGCTGGGCTTCAAACGAGTTATTTTACCAGAAAA
AAGCTTAAAGGGCTGGAAACATCCTCGCGGGATACAACTGATCGGTGTGAATACCGTGGCAGATGCACTAGCGGTTGCTT
TAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(76-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(348-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.721

100

0.662
  radA Streptococcus pneumoniae Rx1

59.111

98.901

0.585
  radA Streptococcus pneumoniae D39

59.111

98.901

0.585
  radA Streptococcus pneumoniae R6

59.111

98.901

0.585
  radA Streptococcus pneumoniae TIGR4

59.111

98.901

0.585
  radA Streptococcus mitis NCTC 12261

59.111

98.901

0.585
  radA Streptococcus mitis SK321

59.111

98.901

0.585

Multiple sequence alignment