Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACKUBV_RS15015 Genome accession   NZ_CP176357
Coordinates   3169754..3171133 (+) Length   459 a.a.
NCBI ID   WP_005456064.1    Uniprot ID   Q87M29
Organism   Vibrio parahaemolyticus strain AG1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3164754..3176133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUBV_RS15000 (ACKUBV_15000) - 3165548..3166153 (-) 606 WP_005481596.1 YtjB family periplasmic protein -
  ACKUBV_RS15005 (ACKUBV_15005) serB 3166245..3167225 (+) 981 WP_020841223.1 phosphoserine phosphatase -
  ACKUBV_RS15010 (ACKUBV_15010) - 3167269..3169617 (-) 2349 WP_069536436.1 PilZ domain-containing protein -
  ACKUBV_RS15015 (ACKUBV_15015) radA/sms 3169754..3171133 (+) 1380 WP_005456064.1 DNA repair protein RadA Machinery gene
  ACKUBV_RS15020 (ACKUBV_15020) fusA 3171350..3173440 (+) 2091 WP_005456593.1 elongation factor G -
  ACKUBV_RS15025 (ACKUBV_15025) - 3173641..3174567 (-) 927 WP_025501461.1 LysR substrate-binding domain-containing protein -
  ACKUBV_RS15030 (ACKUBV_15030) - 3174666..3174875 (+) 210 WP_021449984.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49221.64 Da        Isoelectric Point: 7.4131

>NTDB_id=966797 ACKUBV_RS15015 WP_005456064.1 3169754..3171133(+) (radA/sms) [Vibrio parahaemolyticus strain AG1]
MAKAKRAYVCNDCGADFPRWQGQCNACGAWNTITEVRIAASPTVARNERLSGYAGSATESKVQTLSEIDLQEVPRFTSGF
KELDRVLGGGVVPGAAILIGGNPGAGKSTLLLQTMCTLSGLMPTLYVTGEESLQQVAMRASRLGLPKEHLKMLSETNVDK
ICQIAEKEQPRIMVIDSIQVMHVSDVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSV
LLDGGTDSRFRTLRSHKNRFGAVNELGVFAMTGQGLKEVSNPSAIFLSRGEEETSGSSVMVVWEGTRPLLVEIQALVDYS
QLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALVMALLSSFRDRPLPKDVVVFGEVG
LAGEIRPVPSGQERLNEAFKHGFKKAIVPAANMPKGGIPGMQIHGVKKLSEAIEAFDEL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=966797 ACKUBV_RS15015 WP_005456064.1 3169754..3171133(+) (radA/sms) [Vibrio parahaemolyticus strain AG1]
ATGGCGAAAGCAAAACGAGCGTATGTTTGTAATGATTGTGGCGCGGATTTTCCACGTTGGCAGGGACAATGTAATGCGTG
TGGTGCATGGAATACGATCACAGAGGTGCGCATTGCTGCTTCGCCAACCGTTGCTCGCAATGAACGCTTAAGCGGTTATG
CTGGTTCGGCGACAGAATCGAAAGTCCAAACCTTATCTGAAATCGATCTGCAAGAAGTGCCGCGATTCACTAGTGGTTTT
AAAGAGCTCGATCGTGTGCTTGGTGGTGGTGTCGTACCTGGCGCGGCGATTCTGATAGGTGGTAACCCTGGAGCGGGTAA
GTCGACGTTGCTTCTTCAAACTATGTGTACGTTATCGGGGCTGATGCCGACACTTTACGTTACGGGTGAGGAATCGCTTC
AACAGGTTGCGATGCGCGCGTCTCGTCTTGGTCTGCCAAAAGAGCACCTGAAGATGCTATCAGAAACCAACGTCGATAAA
ATTTGCCAAATTGCAGAGAAAGAGCAGCCCAGAATTATGGTGATTGACTCGATCCAGGTTATGCACGTTTCTGATGTTCA
ATCGTCACCGGGCAGTGTTGCTCAGGTGCGAGAATCTGCGACGGCACTGACGCGATACGCAAAACAGAACAATGTTGCGG
TATTTATTGTTGGTCACGTAACGAAAGATGGTACTCTTGCCGGCCCTAAAGTCCTTGAGCACATTATTGACTGTTCTGTC
TTGCTTGATGGCGGAACAGATAGTCGTTTCCGTACACTGCGCAGTCACAAAAACCGTTTTGGTGCGGTAAATGAATTAGG
CGTGTTTGCGATGACGGGGCAGGGACTGAAAGAAGTAAGTAACCCATCGGCGATTTTCCTTTCTCGTGGCGAAGAAGAGA
CGTCAGGATCTTCGGTCATGGTTGTGTGGGAAGGTACACGTCCTCTATTAGTAGAGATTCAAGCGCTGGTGGACTACTCG
CAATTGGCAAACCCTCGTCGCGTAGCGGTTGGTTTGGAGCAGAATCGTCTCTCCTTATTATTAGCCGTACTGCATAAGCA
CGGTGGTCTGCAAATGGCCGATCAAGACGTGTTTGTGAATGTAGTCGGCGGCGTTAAGGTAACAGAAACCAGTGCGGATC
TTGCTTTAGTGATGGCGTTACTATCAAGCTTTCGCGATCGTCCGTTGCCAAAAGATGTGGTGGTATTTGGCGAAGTTGGT
TTAGCTGGCGAGATTCGTCCGGTACCTAGTGGCCAAGAGCGTTTGAACGAGGCATTTAAGCACGGCTTCAAAAAGGCAAT
TGTCCCGGCTGCTAATATGCCAAAAGGTGGCATTCCGGGGATGCAAATCCACGGCGTTAAGAAGTTGTCAGAGGCTATTG
AGGCTTTTGACGAGCTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87M29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.711

99.346

0.464
  radA Streptococcus mitis SK321

44.079

99.346

0.438
  radA Streptococcus pneumoniae Rx1

43.516

99.129

0.431
  radA Streptococcus pneumoniae D39

43.516

99.129

0.431
  radA Streptococcus pneumoniae R6

43.516

99.129

0.431
  radA Streptococcus pneumoniae TIGR4

43.516

99.129

0.431
  radA Streptococcus mitis NCTC 12261

43.516

99.129

0.431