Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   ACKUBV_RS11890 Genome accession   NZ_CP176357
Coordinates   2515089..2516924 (+) Length   611 a.a.
NCBI ID   WP_024700227.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AG1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2510089..2521924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUBV_RS11870 (ACKUBV_11870) ggt 2510506..2512266 (-) 1761 WP_269169429.1 gamma-glutamyltransferase -
  ACKUBV_RS11875 (ACKUBV_11875) - 2512377..2513036 (-) 660 WP_017449526.1 LysE family translocator -
  ACKUBV_RS11880 (ACKUBV_11880) - 2513128..2513925 (-) 798 WP_023650110.1 AraC family transcriptional regulator -
  ACKUBV_RS11885 (ACKUBV_11885) rarD 2514000..2514914 (-) 915 WP_269169428.1 EamA family transporter RarD -
  ACKUBV_RS11890 (ACKUBV_11890) recQ 2515089..2516924 (+) 1836 WP_024700227.1 ATP-dependent DNA helicase RecQ Machinery gene
  ACKUBV_RS11895 (ACKUBV_11895) - 2516934..2517239 (+) 306 WP_005458579.1 DUF3630 family protein -
  ACKUBV_RS11900 (ACKUBV_11900) - 2517533..2518201 (+) 669 WP_005480953.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  ACKUBV_RS11905 (ACKUBV_11905) gppA 2518398..2519891 (-) 1494 WP_005480964.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  ACKUBV_RS11910 (ACKUBV_11910) rhlB 2519911..2521224 (-) 1314 WP_005458582.1 ATP-dependent RNA helicase RhlB -
  ACKUBV_RS11915 (ACKUBV_11915) trxA 2521336..2521662 (+) 327 WP_005458583.1 thioredoxin TrxA -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69253.21 Da        Isoelectric Point: 6.8897

>NTDB_id=966767 ACKUBV_RS11890 WP_024700227.1 2515089..2516924(+) (recQ) [Vibrio parahaemolyticus strain AG1]
MTSTLLAEQSDLPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPISQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=966767 ACKUBV_RS11890 WP_024700227.1 2515089..2516924(+) (recQ) [Vibrio parahaemolyticus strain AG1]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTTACCGGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCGACAGGCG
GTGGCAAATCTCTTTGCTATCAGATACCTGCACTGGTTCGCAGTGGCATCACCTTAGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAAGCCAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGCCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTAATGCGTGACT
TCATCGAGCGACTCGAAAACCTGCCTTTGGCGATGATTGCGGTGGATGAAGCGCACTGTATCTCGCAGTGGGGACACGAT
TTCCGTCCCGAATACGCCGCTCTGGGTCAGTTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGTTTTGACCGTC
CGAATATCCGCTACAACCTGGTCGAGAAGCACAAGCCGATTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATCATTTACTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGTTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGATATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGCATCAACAAGCCGAACGTCCGTTTTGTAGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTACCTGCTGAAGCGATGATGTTGTACGACCCCGCAGA
CATCAGTTGGCTACGTCGCATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCAGAAGCGCAAACTTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAATACCGCGAGAAGCCTTGT
GGTAACTGTGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGCGTTAACCAAAGCTTTGGTATGACGTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGCATTGGCCGCGATCACAGCCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGACTGTTGTTTCAAAACATCACCCGAAACTCGACGTTGCAATTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTTTCGCTCGAACTCGCGGTTCCTCGTTTGGATACCGCAGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCCGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCGACGTCGTATGGCGAAATGCTGGCAGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(228-333)

DEAD/DEAH box helicase (DEAD)

(31-189)

RQC domain (RQC)

(409-517)

HRDC domain (HRDC)

(537-603)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.541

96.89

0.393

Multiple sequence alignment