Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ38_RS14915 Genome accession   NZ_CP150219
Coordinates   3407811..3408293 (+) Length   160 a.a.
NCBI ID   WP_339790275.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R7-0313     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3402811..3413293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ38_RS14880 (NSQ38_14880) - 3402909..3403076 (+) 168 WP_165980229.1 hypothetical protein -
  NSQ38_RS14885 (NSQ38_14885) - 3403252..3403926 (+) 675 WP_091028526.1 hypothetical protein -
  NSQ38_RS14890 (NSQ38_14890) - 3404044..3404157 (+) 114 WP_082219140.1 YjcZ family sporulation protein -
  NSQ38_RS14895 (NSQ38_14895) - 3404316..3404645 (+) 330 WP_091028528.1 DUF1904 family protein -
  NSQ38_RS14900 (NSQ38_14900) - 3404686..3405909 (-) 1224 WP_339790272.1 MFS transporter -
  NSQ38_RS14905 (NSQ38_14905) - 3406050..3406238 (-) 189 WP_051447369.1 DUF6199 family natural product biosynthesis protein -
  NSQ38_RS14910 (NSQ38_14910) - 3406552..3407700 (+) 1149 WP_176872551.1 ATP-binding protein -
  NSQ38_RS14915 (NSQ38_14915) nucA/comI 3407811..3408293 (+) 483 WP_339790275.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSQ38_RS14920 (NSQ38_14920) - 3408487..3408711 (-) 225 WP_017687353.1 hypothetical protein -
  NSQ38_RS14925 (NSQ38_14925) - 3408919..3409368 (+) 450 WP_339790278.1 hypothetical protein -
  NSQ38_RS14935 (NSQ38_14935) - 3410268..3410495 (+) 228 WP_339790281.1 hypothetical protein -
  NSQ38_RS14940 (NSQ38_14940) - 3410759..3413002 (+) 2244 WP_339790284.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17640.21 Da        Isoelectric Point: 10.3446

>NTDB_id=966740 NSQ38_RS14915 WP_339790275.1 3407811..3408293(+) (nucA/comI) [Paenibacillus sp. FSL R7-0313]
MSKRRTRRKHKGKQGFKKQVLTLVAMLLVALYAWAGGEWPEEIPNPFAGTTKSVDHTITFPSERYPETAKHIKAAIKAGH
SDVCTIDRNGAEGNRDLSLKGVPVKKGKDRDEWPMAMCAEGGTGADIQYITPKDNRGAGSWVGNQLTTYPDGTRVKFVVK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=966740 NSQ38_RS14915 WP_339790275.1 3407811..3408293(+) (nucA/comI) [Paenibacillus sp. FSL R7-0313]
ATGAGTAAGAGACGCACAAGAAGAAAACACAAAGGTAAGCAAGGTTTCAAAAAGCAGGTTCTGACGCTGGTAGCGATGCT
GCTGGTAGCCCTCTATGCCTGGGCTGGGGGCGAATGGCCGGAGGAGATACCTAATCCATTCGCAGGGACTACTAAGAGTG
TAGACCATACCATTACGTTCCCTTCAGAGCGTTATCCCGAAACAGCCAAACATATTAAAGCTGCTATCAAGGCAGGGCAT
TCGGATGTATGCACCATTGATCGTAATGGAGCCGAAGGCAATCGGGATTTATCACTTAAGGGTGTTCCGGTCAAAAAAGG
TAAGGATCGTGACGAGTGGCCCATGGCGATGTGTGCTGAGGGAGGAACAGGTGCAGATATCCAGTACATTACCCCGAAGG
ATAATCGTGGTGCGGGTTCATGGGTAGGGAATCAGTTAACTACATATCCGGATGGAACACGAGTGAAGTTTGTAGTGAAG
TAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(63-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

70

68.75

0.481

Multiple sequence alignment