Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   NHP_RS07120 Genome accession   NZ_AP026684
Coordinates   1343710..1344048 (+) Length   112 a.a.
NCBI ID   WP_265341559.1    Uniprot ID   -
Organism   Helicobacter heilmannii strain     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338710..1349048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHP_RS07100 (ASB1_14970) - 1340674..1341678 (-) 1005 WP_269431183.1 ATP-binding protein -
  NHP_RS07105 (ASB1_14980) - 1341687..1342007 (-) 321 WP_015107497.1 hypothetical protein -
  NHP_RS07110 (ASB1_14990) - 1342004..1342999 (-) 996 WP_015107496.1 flagellar basal body P-ring protein FlgI -
  NHP_RS07115 (ASB1_15000) - 1343189..1343719 (+) 531 WP_265341558.1 hypothetical protein -
  NHP_RS07120 (ASB1_15010) comB9 1343710..1344048 (+) 339 WP_265341559.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  NHP_RS07125 (ASB1_15020) - 1344087..1344368 (+) 282 WP_265341560.1 hypothetical protein -
  NHP_RS07130 (ASB1_15030) - 1344428..1345165 (+) 738 Protein_1404 DNA type IV secretion system protein ComB10 -
  NHP_RS07135 (ASB1_15040) - 1345210..1345941 (+) 732 WP_015107492.1 (Fe-S)-binding protein -
  NHP_RS07140 (ASB1_15050) - 1345943..1347387 (+) 1445 Protein_1406 LutB/LldF family L-lactate oxidation iron-sulfur protein -
  NHP_RS07145 (ASB1_15070) - 1347380..1348021 (+) 642 WP_053825319.1 lactate utilization protein C -
  NHP_RS07150 (ASB1_15080) bcp 1348031..1348486 (+) 456 WP_015107488.1 thioredoxin-dependent thiol peroxidase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 13056.37 Da        Isoelectric Point: 10.5026

>NTDB_id=96674 NHP_RS07120 WP_265341559.1 1343710..1344048(+) (comB9) [Helicobacter heilmannii strain]
MLLVDKSQMRRGYRVLGGKRRAWFCLWLCKVAFKAQIKPLDIFNDKHFTYFKFDSQRSGVKFPVAYKVVDGYDNPINTRI
VGDYLIAEDIAPKWTLREGKVHACVRKVSKTP

Nucleotide


Download         Length: 339 bp        

>NTDB_id=96674 NHP_RS07120 WP_265341559.1 1343710..1344048(+) (comB9) [Helicobacter heilmannii strain]
GTGCTTTTAGTGGATAAAAGCCAAATGCGGCGGGGTTATCGGGTGCTTGGGGGCAAAAGGCGGGCGTGGTTTTGTCTGTG
GTTATGCAAAGTCGCTTTTAAGGCGCAAATCAAACCCCTAGATATTTTTAACGACAAGCATTTCACTTACTTTAAGTTTG
ACAGCCAAAGATCGGGCGTAAAATTCCCTGTGGCTTACAAAGTGGTCGATGGCTACGACAACCCCATCAACACCCGTATT
GTGGGGGATTACCTCATCGCCGAGGACATCGCCCCTAAATGGACGCTAAGAGAGGGTAAGGTGCATGCCTGTGTGCGTAA
AGTTAGCAAAACCCCATGA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(33-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

57.143

93.75

0.536

Multiple sequence alignment