Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NSQ38_RS08720 Genome accession   NZ_CP150219
Coordinates   2016699..2018066 (+) Length   455 a.a.
NCBI ID   WP_036671578.1    Uniprot ID   A0AAN4L8U6
Organism   Paenibacillus sp. FSL R7-0313     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2011699..2023066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ38_RS08705 (NSQ38_08705) - 2012169..2012693 (+) 525 WP_091039155.1 UvrB/UvrC motif-containing protein -
  NSQ38_RS08710 (NSQ38_08710) - 2012722..2013792 (+) 1071 WP_036607140.1 protein arginine kinase -
  NSQ38_RS08715 (NSQ38_08715) - 2013976..2016438 (+) 2463 WP_062836200.1 ATP-dependent Clp protease ATP-binding subunit -
  NSQ38_RS08720 (NSQ38_08720) radA 2016699..2018066 (+) 1368 WP_036671578.1 DNA repair protein RadA Machinery gene
  NSQ38_RS08725 (NSQ38_08725) disA 2018080..2019156 (+) 1077 WP_047841130.1 DNA integrity scanning diadenylate cyclase DisA -
  NSQ38_RS08730 (NSQ38_08730) pssA 2019202..2019933 (+) 732 WP_017692048.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  NSQ38_RS08735 (NSQ38_08735) - 2020060..2020455 (-) 396 WP_017692049.1 hypothetical protein -
  NSQ38_RS08740 (NSQ38_08740) - 2020629..2021714 (+) 1086 WP_338588652.1 PIN/TRAM domain-containing protein -
  NSQ38_RS08745 (NSQ38_08745) ispD 2021797..2022492 (+) 696 WP_091039159.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NSQ38_RS08750 (NSQ38_08750) ispF 2022489..2022965 (+) 477 WP_017692052.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49459.06 Da        Isoelectric Point: 6.9994

>NTDB_id=966735 NSQ38_RS08720 WP_036671578.1 2016699..2018066(+) (radA) [Paenibacillus sp. FSL R7-0313]
MAKVKTKFQCTECGYEAPKWYGKCPGCQSWNSMVEETETVVKTQGRNSPLFDSKDKPLPIIDIDSGQEPRVQTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLMLQTSHALTHSGLRVLYVSGEESVKQTKLRADRLGALSAELYVLCETNMERVEEA
VDQIQPHFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPLLVELQALISTTHFPS
PRRMATGVDLHRLNLIIAVLEKRMGMFLQTQDAYLNVAGGVRLDEPAVDLAVAVSIASSLRDVPTKPDDVIFGEIGLTGE
VRAVSRAEQRVKEAAKLGFKRVILPEKSLKGWKHPRGIQLIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=966735 NSQ38_RS08720 WP_036671578.1 2016699..2018066(+) (radA) [Paenibacillus sp. FSL R7-0313]
GTGGCCAAAGTTAAAACCAAGTTTCAATGTACGGAATGCGGCTATGAAGCCCCCAAGTGGTACGGTAAGTGTCCGGGTTG
TCAGTCATGGAATTCAATGGTGGAAGAAACAGAGACGGTGGTCAAAACACAAGGGAGAAATTCTCCTCTGTTTGACAGTA
AAGATAAACCGCTTCCTATCATAGATATAGATAGCGGTCAGGAACCGCGTGTACAGACTGGAATCGGAGAGTTGAACCGG
GTATTGGGTGGCGGAATCGTTCCAGGTTCACTCGTTCTGGTGGGCGGAGATCCGGGTATCGGTAAATCAACGTTGATGTT
GCAGACGTCTCATGCTTTAACGCACTCGGGTTTGCGTGTGTTATATGTTTCCGGTGAGGAATCAGTCAAGCAAACCAAAT
TGCGGGCAGACCGTCTCGGGGCACTCTCTGCCGAGTTGTATGTGCTGTGTGAAACCAATATGGAACGTGTAGAGGAAGCG
GTGGATCAGATCCAGCCGCATTTTCTTGTCATCGACTCCATTCAGACGGTGTATCTTCCCGAAGTTACCAGTGCGCCGGG
TAGTGTAGCACAGGTAAGGGAATGTACGTCAAGGTTCATGCGAATTGCCAAAGGCAGAGGCATTGCAACGGTTCTTGTGG
GGCATGTTACCAAAGAAGGTGCCATTGCCGGTCCGCGTATGTTAGAACATATGGTGGATTGCGTGCTTTATTTTGAAGGA
GAACGGCATCATACGTATCGCCTGCTGCGTGCGGTGAAGAACCGTTTTGGTTCAACCAATGAGATTGGCATTTTTGAAAT
GGGAGAGGATGGACTTCGTGAGGTGGGCAATCCGTCCGAACTCTTTTTGTCAGAACGTCCACTGGGTGTAGCAGGTTCAA
CGGTAGTTGCCAGTATGGAGGGTACACGCCCTCTGCTCGTGGAATTACAGGCGTTGATCTCGACTACTCATTTCCCTTCT
CCCCGCCGTATGGCAACAGGGGTAGATCTGCATCGATTAAATCTGATCATTGCAGTGCTGGAGAAACGGATGGGCATGTT
TTTACAGACCCAGGATGCATATCTGAACGTGGCTGGTGGAGTACGGTTGGATGAGCCCGCTGTAGATTTGGCGGTTGCTG
TCAGCATTGCATCCAGTTTGAGAGATGTACCGACCAAGCCGGATGACGTCATCTTTGGCGAGATTGGTCTGACAGGTGAG
GTTCGAGCCGTATCACGGGCCGAACAACGAGTGAAGGAAGCCGCGAAGCTGGGCTTCAAACGAGTCATTTTACCGGAAAA
AAGCTTAAAGGGCTGGAAACATCCTCGCGGGATACAACTGATCGGTGTGAATACCGTGGCAGATGCACTAGCGGTTGCTT
TAGATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)

AAA domain (AAA_25)

(77-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.284

100

0.657
  radA Streptococcus pneumoniae Rx1

59.333

98.901

0.587
  radA Streptococcus pneumoniae D39

59.333

98.901

0.587
  radA Streptococcus pneumoniae R6

59.333

98.901

0.587
  radA Streptococcus pneumoniae TIGR4

59.333

98.901

0.587
  radA Streptococcus mitis NCTC 12261

59.333

98.901

0.587
  radA Streptococcus mitis SK321

59.333

98.901

0.587

Multiple sequence alignment