Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSQ38_RS07435 Genome accession   NZ_CP150219
Coordinates   1676928..1677881 (+) Length   317 a.a.
NCBI ID   WP_091036063.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R7-0313     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1671928..1682881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ38_RS07405 (NSQ38_07405) - 1671981..1673444 (+) 1464 WP_339790433.1 catalase -
  NSQ38_RS07410 (NSQ38_07410) - 1673654..1674070 (+) 417 WP_017691824.1 BlaI/MecI/CopY family transcriptional regulator -
  NSQ38_RS07415 (NSQ38_07415) - 1674096..1674932 (+) 837 WP_339788255.1 M56 family metallopeptidase -
  NSQ38_RS07420 (NSQ38_07420) - 1674985..1675398 (+) 414 WP_339788260.1 DoxX family protein -
  NSQ38_RS07425 (NSQ38_07425) - 1675598..1676299 (+) 702 WP_036612794.1 pirin family protein -
  NSQ38_RS07430 (NSQ38_07430) - 1676344..1676679 (+) 336 WP_339788263.1 hypothetical protein -
  NSQ38_RS07435 (NSQ38_07435) ceuB 1676928..1677881 (+) 954 WP_091036063.1 ABC transporter permease Machinery gene
  NSQ38_RS07440 (NSQ38_07440) - 1677878..1678846 (+) 969 WP_339788266.1 iron chelate uptake ABC transporter family permease subunit -
  NSQ38_RS07445 (NSQ38_07445) - 1678840..1679598 (+) 759 WP_339788269.1 ABC transporter ATP-binding protein -
  NSQ38_RS07450 (NSQ38_07450) - 1679642..1680628 (+) 987 WP_339788271.1 siderophore ABC transporter substrate-binding protein -
  NSQ38_RS07455 (NSQ38_07455) - 1680804..1682399 (+) 1596 WP_339788274.1 spore germination protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35008.16 Da        Isoelectric Point: 10.0976

>NTDB_id=966731 NSQ38_RS07435 WP_091036063.1 1676928..1677881(+) (ceuB) [Paenibacillus sp. FSL R7-0313]
MKLRYMLIVLAVLSIVYIFIGNSDISPLDIFHLSSVQLQVLQVSRFPRLISILVAGISMSVIGLIMQQLTRNRFVSPTTA
GTMDSARLGILVTLMWFPGASPLQKMLVAFAFALAGTLIFMRILEKVKFKDTIYIALLGLMFGNIVSSVTTFFAYKNDLI
QNISSWLQGDFSTIMKGRYELIYISIPLLIIVYLFANRFTLAGMGEDFSTNLGLAYRRVVNIGLILVAMVSAVVIITVGT
IPFLGLVVPNIVTLYKGDNLRDTLPHTAVLGAIFVLVCDILGQLIIYPYQLSISLTVGVVGSVLFLYLLLRRKAYGS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=966731 NSQ38_RS07435 WP_091036063.1 1676928..1677881(+) (ceuB) [Paenibacillus sp. FSL R7-0313]
ATGAAGTTACGTTATATGTTGATCGTATTGGCTGTATTGTCTATCGTATACATATTTATTGGCAATTCAGACATTTCACC
ATTGGATATATTTCATTTGTCCTCTGTCCAGCTACAGGTATTACAAGTTAGCCGGTTTCCCCGCCTGATCAGCATCCTTG
TCGCCGGGATCAGCATGAGTGTAATCGGACTGATTATGCAGCAGCTGACACGCAACCGATTCGTTTCCCCAACAACAGCT
GGAACGATGGATTCAGCCAGATTGGGTATTCTTGTGACGTTAATGTGGTTCCCGGGAGCATCCCCTCTGCAAAAAATGTT
GGTCGCTTTTGCCTTTGCTCTGGCGGGAACACTGATTTTCATGCGAATTCTGGAGAAAGTCAAGTTCAAGGATACGATAT
ATATCGCTTTGCTAGGTCTTATGTTTGGCAACATTGTAAGCTCCGTGACAACATTTTTTGCTTACAAAAACGACCTGATC
CAGAACATTTCTTCTTGGTTACAGGGTGACTTCTCCACCATCATGAAGGGACGTTATGAACTGATCTATATCAGTATTCC
GTTGCTCATTATCGTGTACCTGTTTGCTAATCGTTTTACACTCGCAGGGATGGGCGAAGATTTCTCAACCAACCTTGGAC
TGGCGTATCGACGAGTTGTGAATATCGGACTGATCCTGGTGGCGATGGTTTCAGCGGTAGTGATTATTACGGTAGGTACA
ATTCCGTTTCTGGGCTTAGTCGTGCCCAATATCGTAACACTGTACAAAGGGGATAACTTACGTGATACATTGCCTCATAC
GGCAGTGCTTGGTGCGATCTTCGTTCTGGTCTGCGATATTCTGGGTCAATTAATTATTTATCCTTATCAACTTTCGATCA
GTCTGACGGTGGGAGTTGTGGGAAGTGTATTATTCCTGTATTTACTGCTTCGAAGAAAGGCTTATGGATCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.633

99.685

0.505

Multiple sequence alignment