Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   NHP_RS03695 Genome accession   NZ_AP026684
Coordinates   700230..700496 (-) Length   88 a.a.
NCBI ID   WP_053825476.1    Uniprot ID   -
Organism   Helicobacter heilmannii strain     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 695230..705496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHP_RS03670 (ASB1_07710) - 695238..697558 (-) 2321 Protein_728 TonB-dependent receptor family protein -
  NHP_RS03675 (ASB1_07720) - 697735..698442 (+) 708 WP_015106426.1 outer membrane beta-barrel protein -
  NHP_RS03680 (ASB1_07730) fliW 698490..698894 (+) 405 WP_015106425.1 flagellar assembly protein FliW -
  NHP_RS03685 (ASB1_07740) murG 698900..699973 (+) 1074 WP_015106424.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  NHP_RS03690 (ASB1_07750) comB3 699964..700230 (-) 267 WP_015106423.1 hypothetical protein Machinery gene
  NHP_RS03695 (ASB1_07760) comB2 700230..700496 (-) 267 WP_053825476.1 TrbC/VirB2 family protein Machinery gene
  NHP_RS03700 (ASB1_07770) - 700767..701525 (+) 759 WP_265341717.1 HrcA family transcriptional regulator -
  NHP_RS03705 (ASB1_07780) grpE 701559..702134 (+) 576 WP_015106420.1 nucleotide exchange factor GrpE -
  NHP_RS03710 (ASB1_07790) dnaK 702160..704025 (+) 1866 WP_015106419.1 molecular chaperone DnaK -
  NHP_RS03715 (ASB1_07800) - 705191..705466 (+) 276 WP_015106417.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10069.14 Da        Isoelectric Point: 8.7112

>NTDB_id=96669 NHP_RS03695 WP_053825476.1 700230..700496(-) (comB2) [Helicobacter heilmannii strain]
MLRLLWIFLALEGLQADGGDHFFKAIEAQLQSSTAKGILMLIFIGIAFYVWRNLDRWRDILFTILGVVLGIMLFFKAPAL
ASWFMGLF

Nucleotide


Download         Length: 267 bp        

>NTDB_id=96669 NHP_RS03695 WP_053825476.1 700230..700496(-) (comB2) [Helicobacter heilmannii strain]
ATCTTGCGTTTGTTGTGGATCTTTTTAGCACTGGAGGGCTTGCAAGCCGATGGAGGAGATCATTTCTTTAAGGCCATAGA
GGCCCAGTTGCAGAGCAGCACAGCTAAGGGCATTTTGATGCTGATTTTTATCGGCATTGCTTTTTATGTGTGGCGTAATT
TAGACCGCTGGCGCGATATTTTGTTTACGATTTTGGGTGTGGTGCTGGGCATCATGCTCTTTTTTAAAGCTCCCGCTTTA
GCCTCGTGGTTCATGGGGTTGTTCTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

70

90.909

0.636

Multiple sequence alignment