Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MKY62_RS13445 Genome accession   NZ_CP150217
Coordinates   2588241..2589011 (-) Length   256 a.a.
NCBI ID   WP_016885480.1    Uniprot ID   -
Organism   Bacillus sp. FSL R7-0646     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2583241..2594011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY62_RS13425 (MKY62_13425) - 2583315..2584127 (-) 813 WP_003183615.1 pyruvate, water dikinase regulatory protein -
  MKY62_RS13430 (MKY62_13430) - 2584153..2584791 (-) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  MKY62_RS13435 (MKY62_13435) glyS 2584989..2587028 (-) 2040 WP_009327872.1 glycine--tRNA ligase subunit beta -
  MKY62_RS13440 (MKY62_13440) glyQ 2587021..2587908 (-) 888 WP_003183621.1 glycine--tRNA ligase subunit alpha -
  MKY62_RS13445 (MKY62_13445) recO 2588241..2589011 (-) 771 WP_016885480.1 DNA repair protein RecO Machinery gene
  MKY62_RS13450 (MKY62_13450) - 2589049..2589192 (-) 144 WP_003183626.1 YqzL family protein -
  MKY62_RS13455 (MKY62_13455) era 2589354..2590259 (-) 906 WP_009327871.1 GTPase Era -
  MKY62_RS13460 (MKY62_13460) - 2590240..2590650 (-) 411 WP_003183631.1 cytidine deaminase -
  MKY62_RS13465 (MKY62_13465) - 2590782..2591162 (-) 381 WP_003183633.1 diacylglycerol kinase family protein -
  MKY62_RS13470 (MKY62_13470) ybeY 2591140..2591616 (-) 477 WP_003183635.1 rRNA maturation RNase YbeY -
  MKY62_RS13475 (MKY62_13475) - 2591613..2593667 (-) 2055 WP_237562993.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29531.16 Da        Isoelectric Point: 8.3083

>NTDB_id=966668 MKY62_RS13445 WP_016885480.1 2588241..2589011(-) (recO) [Bacillus sp. FSL R7-0646]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRN
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLDDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=966668 MKY62_RS13445 WP_016885480.1 2588241..2589011(-) (recO) [Bacillus sp. FSL R7-0646]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAGATCATTACGCTATTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCATCTTTTTTATTCCGCAAATCATCCGGCCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGAAT
ATCCGCGAGGATCTGTTTTTAACAGCTTACGCGGCCTACATCGCTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTGCTTCAGTCAATGAGGAGGCTGAATGACGGTACAGATCCCGACATTATCGCCAACC
TCATCGAAGTCAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGACTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTCAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTTATTCAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGACGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

77.734

100

0.777

Multiple sequence alignment