Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   NHP_RS00930 Genome accession   NZ_AP026684
Coordinates   176855..177247 (+) Length   130 a.a.
NCBI ID   WP_015107006.1    Uniprot ID   -
Organism   Helicobacter heilmannii strain     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 171855..182247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHP_RS00905 (ASB1_01900) - 173279..173923 (-) 645 WP_265341625.1 phosphoenolpyruvate carboxylase -
  NHP_RS00910 (ASB1_01910) ilvC 173997..174989 (+) 993 WP_053825673.1 ketol-acid reductoisomerase -
  NHP_RS00915 (ASB1_01920) minD 174986..175798 (+) 813 WP_231850726.1 septum site-determining protein MinD -
  NHP_RS00920 (ASB1_01930) minE 175795..176043 (+) 249 WP_015107008.1 cell division topological specificity factor MinE -
  NHP_RS00925 (ASB1_01940) dprA 176044..176858 (+) 815 Protein_181 DNA-processing protein DprA -
  NHP_RS00930 (ASB1_01950) dprB 176855..177247 (+) 393 WP_015107006.1 Holliday junction resolvase RuvX Machinery gene
  NHP_RS00935 (ASB1_01960) - 177229..177951 (-) 723 WP_015107005.1 YebC/PmpR family DNA-binding transcriptional regulator -
  NHP_RS00940 (ASB1_01970) hemB 177951..178919 (-) 969 WP_015107004.1 porphobilinogen synthase -
  NHP_RS00945 (ASB1_01980) - 178912..180111 (-) 1200 WP_053825674.1 amidophosphoribosyltransferase -
  NHP_RS00950 (ASB1_01990) - 180111..181379 (-) 1269 WP_015107002.1 ArsS family sensor histidine kinase -
  NHP_RS00955 (ASB1_02000) - 181380..182063 (-) 684 WP_053825675.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14453.04 Da        Isoelectric Point: 9.6545

>NTDB_id=96666 NHP_RS00930 WP_015107006.1 176855..177247(+) (dprB) [Helicobacter heilmannii strain]
MIMACDIGLKRIGLAMGVQGVVLPLEPILRTSRKQASTELQALLESKKPSCLVVGLPPEHYADTRKRVLHFVGLLNFAPL
VFVNEGNTSLDALEHTHHLKAQKRQNARKDGKLDSLAACEILKRYQEMLV

Nucleotide


Download         Length: 393 bp        

>NTDB_id=96666 NHP_RS00930 WP_015107006.1 176855..177247(+) (dprB) [Helicobacter heilmannii strain]
ATGATCATGGCTTGCGATATAGGCCTAAAACGCATTGGGTTAGCCATGGGTGTGCAGGGCGTTGTCTTGCCCCTAGAACC
CATTTTACGCACCAGCCGCAAACAAGCCAGTACAGAGTTGCAAGCCCTGCTAGAGAGCAAAAAACCTAGCTGTCTTGTGG
TGGGGTTGCCCCCAGAGCACTACGCCGACACCCGCAAACGCGTTTTGCACTTTGTGGGGCTTTTAAACTTTGCACCCCTT
GTGTTTGTCAATGAGGGCAACACAAGCCTAGATGCCCTAGAGCACACCCACCATCTCAAGGCGCAAAAACGCCAAAACGC
CCGCAAAGATGGCAAGCTAGACAGCCTAGCCGCCTGTGAAATCTTAAAACGCTATCAAGAAATGTTGGTGTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

53.175

96.923

0.515

Multiple sequence alignment