Detailed information NTG0966652

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJIYN_RS05650
• Genome accession: NZ_CP176051
• Coordinates: 1171192..1172184 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain razor3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1166192..1177184

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJIYN_RS05620 (ACJIYN_05625)	ispD	1166253..1166963 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACJIYN_RS05625 (ACJIYN_05630)	ispF	1166963..1167442 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACJIYN_RS05630 (ACJIYN_05635)	truD	1167439..1168488 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ACJIYN_RS05635 (ACJIYN_05640)	surE	1168469..1169230 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACJIYN_RS05640 (ACJIYN_05645)	pcm	1169224..1169850 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACJIYN_RS05645 (ACJIYN_05650)	nlpD	1170035..1171129 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ACJIYN_RS05650 (ACJIYN_05655)	rpoS	1171192..1172184 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACJIYN_RS05655 (ACJIYN_05660)	-	1172355..1172906 (-)	552	WP_001179444.1	flavodoxin family protein	-
ACJIYN_RS05660 (ACJIYN_05665)	-	1173131..1174174 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ACJIYN_RS05665 (ACJIYN_05670)	ygbN	1174317..1175681 (-)	1365	WP_000104433.1	GntP family transporter	-
ACJIYN_RS05670 (ACJIYN_05675)	ygbM	1175770..1176546 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=966652 ACJIYN_RS05650 WP_000081550.1 1171192..1172184(+) (rpoS) [Escherichia coli strain razor3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=966652 ACJIYN_RS05650 WP_000081550.1 1171192..1172184(+) (rpoS) [Escherichia coli strain razor3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715