Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKY42_RS29070 Genome accession   NZ_CP150216
Coordinates   6400016..6401383 (-) Length   455 a.a.
NCBI ID   WP_090905261.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL W7-1088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6395016..6406383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY42_RS29040 (MKY42_29040) ispF 6395089..6395565 (-) 477 WP_053779226.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MKY42_RS29045 (MKY42_29045) ispD 6395562..6396254 (-) 693 WP_339846563.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MKY42_RS29050 (MKY42_29050) - 6396348..6397433 (-) 1086 WP_076292152.1 PIN/TRAM domain-containing protein -
  MKY42_RS29055 (MKY42_29055) - 6397608..6398003 (+) 396 WP_024633611.1 hypothetical protein -
  MKY42_RS29060 (MKY42_29060) pssA 6398151..6398882 (-) 732 WP_090905263.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MKY42_RS29065 (MKY42_29065) disA 6398926..6400002 (-) 1077 WP_076292150.1 DNA integrity scanning diadenylate cyclase DisA -
  MKY42_RS29070 (MKY42_29070) radA 6400016..6401383 (-) 1368 WP_090905261.1 DNA repair protein RadA Machinery gene
  MKY42_RS29075 (MKY42_29075) clpC 6401684..6404146 (-) 2463 WP_110002403.1 ATP-dependent protease ATP-binding subunit ClpC -
  MKY42_RS29080 (MKY42_29080) - 6404334..6405404 (-) 1071 WP_053779232.1 protein arginine kinase -
  MKY42_RS29085 (MKY42_29085) - 6405433..6405957 (-) 525 WP_339846574.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49656.29 Da        Isoelectric Point: 6.8212

>NTDB_id=966616 MKY42_RS29070 WP_090905261.1 6400016..6401383(-) (radA) [Paenibacillus sp. FSL W7-1088]
MAKVKTKFQCTECGYEAPKWYGKCPGCQSWNSMVEETETVVKTQGRNSPLFESKDKPLPIIDIDSGQEPRVQTGIEELNR
VLGGGIVPGSLVLVGGDPGIGKSTLMLQTSHALTHSGLRVLYVSGEESVKQTKLRADRLGALSPELYVLCETNMERVEEA
VEQIQPHFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPLLVELQALISTTHFPS
PRRMATGVDLHRLNLIIAVLEKRMGMFLQTQDAYLNVAGGVRLDEPAVDLAVAISIASSLRDVPTKPDDVIFGEIGLTGE
VRAVSRAEQRVKEAQKLGFKRVILPEKSLKGWKHPRGIQLIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=966616 MKY42_RS29070 WP_090905261.1 6400016..6401383(-) (radA) [Paenibacillus sp. FSL W7-1088]
GTGGCCAAAGTTAAAACCAAGTTTCAGTGTACGGAATGCGGCTATGAAGCCCCCAAATGGTACGGCAAATGTCCGGGTTG
TCAGTCTTGGAATTCAATGGTGGAAGAAACCGAAACAGTGGTCAAAACACAAGGGAGAAATTCCCCTCTTTTTGAGAGTA
AAGATAAGCCACTTCCCATCATAGATATAGATAGCGGTCAGGAACCGCGTGTACAGACTGGAATTGAAGAGCTGAACCGG
GTTTTGGGCGGCGGAATTGTTCCAGGATCTCTCGTTCTGGTGGGCGGAGACCCCGGAATCGGAAAATCAACGTTAATGTT
GCAAACATCTCATGCATTGACTCATTCAGGTTTGCGCGTGTTATATGTCTCAGGCGAGGAATCCGTTAAGCAAACGAAAT
TGCGGGCTGACCGTCTGGGTGCGCTGTCTCCTGAGTTATATGTACTATGTGAGACCAATATGGAGCGGGTTGAGGAAGCG
GTGGAGCAGATCCAACCGCATTTTCTAGTCATCGACTCCATTCAGACCGTATATCTGCCAGAAGTCACCAGTGCTCCCGG
TAGTGTAGCTCAGGTAAGGGAATGTACGTCACGGTTCATGCGGATCGCCAAAGGGCGAGGCATTGCAACCGTACTTGTGG
GGCATGTTACGAAAGAAGGTGCTATTGCCGGTCCCCGTATGTTGGAGCATATGGTGGACTGTGTTCTTTATTTTGAAGGA
GAGCGGCATCATACGTATCGCCTTTTACGTGCGGTCAAGAACCGTTTTGGTTCGACCAATGAGATCGGTATTTTTGAAAT
GGGCGAAGATGGACTTCGTGAAGTAGGCAACCCTTCTGAGCTCTTTTTGTCAGAACGTCCACTGGGTGTGGCTGGTTCTA
CCGTAGTGGCCAGCATGGAGGGCACACGTCCTCTGCTTGTGGAATTGCAGGCATTGATTTCTACCACACATTTCCCTTCT
CCCCGACGTATGGCAACTGGGGTAGATCTCCATCGATTAAATTTGATTATTGCGGTACTGGAGAAACGGATGGGCATGTT
CCTGCAAACACAGGATGCTTATCTGAACGTAGCTGGTGGTGTGAGATTAGATGAGCCGGCAGTGGACTTGGCGGTTGCTA
TAAGTATCGCATCCAGCTTGAGAGATGTGCCTACCAAGCCAGATGACGTTATCTTTGGGGAAATCGGTTTGACGGGTGAG
GTTCGGGCCGTTTCGCGGGCTGAACAACGTGTGAAAGAAGCTCAGAAATTGGGCTTCAAGCGTGTCATTTTACCAGAAAA
AAGCTTAAAGGGCTGGAAACATCCTCGCGGGATACAACTGATCGGTGTGAATACCGTGGCAGATGCACTAGCGGTTGCTT
TAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)

AAA domain (AAA_25)

(71-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

100

0.657
  radA Streptococcus pneumoniae Rx1

59.333

98.901

0.587
  radA Streptococcus pneumoniae D39

59.333

98.901

0.587
  radA Streptococcus pneumoniae R6

59.333

98.901

0.587
  radA Streptococcus pneumoniae TIGR4

59.333

98.901

0.587
  radA Streptococcus mitis NCTC 12261

59.333

98.901

0.587
  radA Streptococcus mitis SK321

59.333

98.901

0.587

Multiple sequence alignment