Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MKX55_RS16075 Genome accession   NZ_CP150214
Coordinates   3241556..3243367 (-) Length   603 a.a.
NCBI ID   WP_339233485.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL W7-1281     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3236556..3248367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX55_RS16050 (MKX55_16050) - 3237320..3237928 (-) 609 WP_042535431.1 GTP pyrophosphokinase family protein -
  MKX55_RS16055 (MKX55_16055) tnpA 3238159..3238590 (-) 432 WP_256708565.1 IS200/IS605 family transposase -
  MKX55_RS16060 (MKX55_16060) - 3238840..3239409 (+) 570 WP_339178629.1 CYTH domain-containing protein -
  MKX55_RS16065 (MKX55_16065) - 3239553..3239942 (+) 390 WP_339178632.1 globin -
  MKX55_RS16070 (MKX55_16070) - 3239958..3240821 (+) 864 WP_339178634.1 ClpXP adapter SpxH family protein -
  MKX55_RS16075 (MKX55_16075) pepF 3241556..3243367 (-) 1812 WP_339233485.1 oligoendopeptidase F Regulator
  MKX55_RS16080 (MKX55_16080) - 3243465..3244661 (-) 1197 WP_339233487.1 competence protein CoiA family protein -
  MKX55_RS16085 (MKX55_16085) mecA 3244842..3245534 (-) 693 WP_042535441.1 adaptor protein MecA -
  MKX55_RS16090 (MKX55_16090) spxA 3245920..3246315 (-) 396 WP_040979700.1 transcriptional regulator SpxA -
  MKX55_RS16095 (MKX55_16095) - 3246740..3247081 (+) 342 WP_339178644.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69151.19 Da        Isoelectric Point: 4.4586

>NTDB_id=966552 MKX55_RS16075 WP_339233485.1 3241556..3243367(-) (pepF) [Oceanobacillus sp. FSL W7-1281]
MAKAAKQLPKRDEIPEESTWRLEDIFETDEQWKEEFQSLKNDISKLAAYKGKLGTSADTLLEALQVQDELSERLGKLYVY
GHLRTDQDTTNSFYQGLNAQAENLLTTASSQFSFLVPEILEIPEEKLKQFIEENKELQVYKKVLDDINHSRPHILSEKEE
VLLAEADEPIGAISQTFGMLNNADLTFPSITNADGEEIELTHGRYSTFMESSDRNVREQAFNAMYDTYGSFKNTFASTLS
GEVKSHNFNAKVRNYESARQAALDNNHIPEEVYDNLVEAVNEKLPLLHRYAELRKKILGVDELHMYDLYTPLVKDVKMPV
TYEEAKKYVMEGLKPLGEEYAGILEEAFSERWIDVEENKGKRSGAYSSGTYGTNPYILLNWQDDVNNTFTLAHELGHSVH
SYYSRKYQPFRYGNYSIFVAEVASTTNEALLNDYLLEHLDDEKEKLYILNHFLEGFRGTVFRQTMFAEFEHDIHVLAQNG
EALTADKLTEVYYNLNKKYYGEDVVSDEKIGLEWARIPHFYMNYYVYQYATGYSAATALSKQILDGEEGAVDRYLGFLQS
GSSEDPIDVLKKAGVDMTQKQAILDALDVFEEKLTEMEALLEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=966552 MKX55_RS16075 WP_339233485.1 3241556..3243367(-) (pepF) [Oceanobacillus sp. FSL W7-1281]
ATGGCAAAAGCAGCAAAGCAATTACCAAAGCGTGATGAAATACCAGAAGAGTCTACATGGCGTTTAGAAGACATTTTTGA
GACGGATGAACAATGGAAAGAAGAATTTCAAAGCTTAAAAAATGATATTTCAAAATTGGCAGCGTATAAAGGAAAATTAG
GGACTTCCGCAGATACGTTATTAGAAGCATTACAGGTTCAGGATGAACTGTCAGAGCGTCTAGGTAAGTTATATGTTTAT
GGTCATTTACGCACGGACCAGGATACGACGAATTCCTTTTACCAAGGATTAAATGCGCAGGCAGAAAATCTGCTGACGAC
TGCATCCAGTCAATTTAGCTTTCTTGTACCGGAAATTTTAGAAATACCAGAAGAAAAGCTCAAGCAGTTTATAGAAGAGA
ACAAAGAACTTCAGGTTTATAAAAAAGTATTAGATGATATTAATCACAGCCGTCCGCATATATTAAGCGAGAAGGAAGAG
GTATTGCTTGCAGAGGCAGATGAACCGATCGGAGCCATTTCACAAACATTCGGTATGCTGAATAATGCCGATTTAACCTT
CCCGTCCATCACAAATGCAGATGGAGAAGAAATTGAGCTGACGCACGGCAGATACTCTACATTTATGGAATCATCAGACC
GGAATGTACGCGAACAAGCTTTTAATGCGATGTATGATACGTACGGTTCATTTAAAAATACATTTGCCTCTACATTAAGC
GGAGAGGTGAAATCACATAATTTTAATGCGAAAGTCCGGAATTATGAGAGTGCACGTCAGGCTGCTCTAGATAATAACCA
TATACCTGAAGAAGTATATGATAATTTAGTTGAGGCAGTGAATGAGAAATTGCCTTTATTGCACCGCTATGCCGAATTAA
GAAAGAAAATTCTCGGTGTCGATGAACTGCATATGTACGATTTATATACACCGCTCGTAAAAGATGTGAAAATGCCTGTT
ACGTATGAAGAAGCTAAAAAATACGTCATGGAAGGCTTAAAGCCATTAGGGGAAGAATACGCCGGCATTCTAGAGGAAGC
TTTTAGCGAGCGCTGGATCGATGTAGAAGAAAATAAAGGAAAAAGAAGTGGCGCCTACTCGTCAGGAACATATGGAACAA
ATCCATATATTCTTTTGAACTGGCAGGATGATGTGAATAACACATTTACGCTGGCTCATGAATTGGGACATTCTGTGCAC
AGCTATTATTCAAGAAAATATCAGCCGTTCCGTTATGGAAACTATTCCATCTTTGTCGCAGAAGTGGCGTCGACTACAAA
TGAAGCACTATTAAACGATTATTTATTAGAGCATCTGGATGACGAAAAGGAAAAGCTTTATATTTTAAACCACTTTTTAG
AAGGCTTCCGCGGAACCGTATTCCGCCAAACCATGTTTGCTGAATTCGAGCATGATATTCATGTGCTGGCTCAAAATGGA
GAAGCGTTAACTGCTGATAAACTGACAGAGGTGTATTATAATTTAAATAAAAAATATTACGGAGAAGATGTCGTAAGTGA
TGAAAAAATTGGCTTAGAATGGGCGCGAATTCCTCACTTTTATATGAATTATTATGTATATCAATATGCTACAGGTTATT
CTGCGGCAACGGCGCTATCAAAACAGATTTTAGATGGGGAAGAAGGTGCTGTGGACCGCTATTTAGGCTTCCTGCAATCT
GGCAGCAGCGAGGACCCTATTGATGTATTGAAAAAAGCTGGCGTGGATATGACGCAAAAACAAGCTATTTTAGATGCTCT
GGATGTTTTTGAAGAAAAATTGACAGAGATGGAAGCGTTGCTGGAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-187)

Peptidase family M3 (Peptidase_M3)

(208-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.253

98.342

0.494

Multiple sequence alignment