Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYE61_RS13245 Genome accession   NZ_CP150211
Coordinates   2605289..2606656 (-) Length   455 a.a.
NCBI ID   WP_118890037.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL W7-1304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2600289..2611656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE61_RS13230 (NYE61_13230) cysE 2601191..2601856 (-) 666 WP_095313594.1 serine O-acetyltransferase -
  NYE61_RS13235 (NYE61_13235) gltX 2602316..2603785 (-) 1470 WP_095313596.1 glutamate--tRNA ligase -
  NYE61_RS13240 (NYE61_13240) - 2604066..2605157 (-) 1092 WP_095313611.1 PIN/TRAM domain-containing protein -
  NYE61_RS13245 (NYE61_13245) radA 2605289..2606656 (-) 1368 WP_118890037.1 DNA repair protein RadA Machinery gene
  NYE61_RS13250 (NYE61_13250) clpC 2607005..2609434 (-) 2430 WP_095313600.1 ATP-dependent protease ATP-binding subunit ClpC -
  NYE61_RS13255 (NYE61_13255) - 2609448..2610512 (-) 1065 WP_095313602.1 protein arginine kinase -
  NYE61_RS13260 (NYE61_13260) - 2610509..2611057 (-) 549 WP_095313604.1 UvrB/UvrC motif-containing protein -
  NYE61_RS13265 (NYE61_13265) - 2611114..2611581 (-) 468 WP_095313606.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50122.79 Da        Isoelectric Point: 7.3681

>NTDB_id=966471 NYE61_RS13245 WP_118890037.1 2605289..2606656(-) (radA) [Oceanobacillus sp. FSL W7-1304]
MAKRKTKYVCQDCGYESAKWMGKCPGCNNWNTMVEEVEATTVRGKQVSGTHVVSKPERITSIESQKEPRITTTMKEFNRV
LGGGIVLGSLVLIGGDPGIGKSTLLLQISSQLAGKQLPVLYVSGEESIRQTKLRADRLGVKEDLLYVLSETNLFDIQKQI
EEIRPSFVVIDSIQTIFKEDVTSAPGSVSQVRECTVDLMKVAKSNGIPIFIVGHVTKEGAIAGPRLLEHMVDAVLYFEGE
RHHTYRILRGVKNRFGSTNEMGIFEMKEEGLREVMNPSEIFLEERSEGSAGSTVVASMEGTRPVLVEIQALISPTSFGNP
RRMATGIDHNRVPLLMAVLEKRVGLMLQNQDAYIKVAGGVKLDEPAIDLALAVSIASSFRDKPTNPDDIFIGEVGLTGEI
RRVSRIEQRVQEAAKLGFKRVICPENNLDGWTYPKGIQVHGVRTVQQALDIAMAQ

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=966471 NYE61_RS13245 WP_118890037.1 2605289..2606656(-) (radA) [Oceanobacillus sp. FSL W7-1304]
TTGGCTAAGCGAAAAACGAAGTATGTTTGTCAAGATTGTGGATATGAATCTGCGAAATGGATGGGCAAATGTCCTGGGTG
TAATAATTGGAATACGATGGTGGAAGAAGTTGAAGCAACCACTGTCAGAGGAAAACAAGTAAGTGGTACACATGTCGTTA
GTAAGCCAGAAAGGATTACTTCGATCGAGTCACAGAAAGAACCGCGTATCACCACAACGATGAAGGAATTCAATCGTGTG
CTTGGTGGCGGTATTGTTCTCGGATCGCTTGTTTTAATTGGTGGTGATCCTGGGATTGGCAAATCTACCTTGTTATTACA
AATCTCTTCACAGCTTGCAGGGAAGCAATTACCAGTTCTGTACGTTTCTGGTGAGGAATCGATCCGCCAAACAAAGCTGC
GTGCTGATCGACTAGGAGTAAAAGAGGATCTGCTATATGTCCTTTCTGAAACGAATTTGTTTGATATTCAAAAACAAATT
GAGGAGATTCGCCCCTCATTTGTCGTAATTGACTCCATTCAAACGATTTTTAAGGAAGATGTAACGAGTGCTCCTGGTAG
TGTTTCACAAGTACGAGAATGTACTGTTGATTTAATGAAGGTCGCAAAATCAAACGGCATTCCGATATTTATAGTTGGTC
ACGTGACGAAAGAAGGGGCGATAGCTGGTCCAAGACTGCTCGAGCATATGGTTGATGCCGTATTGTATTTTGAAGGAGAA
AGGCATCATACGTATCGAATATTACGAGGTGTGAAGAATCGCTTTGGAAGTACGAATGAAATGGGTATTTTTGAGATGAA
AGAAGAAGGCCTTCGAGAAGTAATGAACCCTTCGGAGATTTTTCTAGAAGAGCGTTCAGAAGGATCAGCAGGCTCTACTG
TCGTTGCATCGATGGAAGGGACAAGACCTGTACTCGTTGAAATTCAAGCATTGATTTCTCCAACTAGCTTCGGTAATCCA
CGCCGCATGGCCACAGGAATTGATCATAACCGTGTTCCTTTATTGATGGCAGTTCTCGAAAAGCGTGTCGGCCTTATGCT
GCAAAACCAGGATGCCTACATTAAGGTAGCTGGTGGTGTGAAGCTTGATGAACCTGCAATTGATCTAGCGCTAGCTGTAA
GCATTGCTTCAAGCTTTCGGGATAAGCCGACGAATCCAGATGATATATTTATTGGAGAAGTTGGGCTTACTGGGGAGATC
AGACGTGTGTCGCGTATCGAACAGCGTGTTCAAGAAGCAGCTAAGCTTGGCTTTAAACGTGTCATTTGTCCGGAAAACAA
TTTGGATGGCTGGACATACCCGAAAGGAATTCAAGTACATGGGGTTCGTACCGTACAACAAGCATTAGATATAGCGATGG
CCCAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-219)

Subunit ChlI of Mg-chelatase (ChlI)

(355-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.781

100

0.749
  radA Streptococcus pneumoniae Rx1

62.775

99.78

0.626
  radA Streptococcus pneumoniae D39

62.775

99.78

0.626
  radA Streptococcus pneumoniae R6

62.775

99.78

0.626
  radA Streptococcus pneumoniae TIGR4

62.775

99.78

0.626
  radA Streptococcus mitis NCTC 12261

62.775

99.78

0.626
  radA Streptococcus mitis SK321

62.555

99.78

0.624

Multiple sequence alignment