Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NYE61_RS06375 Genome accession   NZ_CP150211
Coordinates   1271825..1273636 (-) Length   603 a.a.
NCBI ID   WP_095309488.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL W7-1304     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1266825..1278636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE61_RS06345 (NYE61_06345) - 1267504..1268313 (-) 810 WP_095309476.1 NAD kinase -
  NYE61_RS06350 (NYE61_06350) - 1268414..1269022 (-) 609 WP_118888748.1 GTP pyrophosphokinase family protein -
  NYE61_RS06355 (NYE61_06355) - 1269250..1269822 (+) 573 WP_095309480.1 CYTH domain-containing protein -
  NYE61_RS06360 (NYE61_06360) - 1269907..1270293 (+) 387 WP_095309482.1 globin -
  NYE61_RS06365 (NYE61_06365) - 1270312..1271205 (+) 894 WP_095309484.1 ClpXP adapter SpxH family protein -
  NYE61_RS06370 (NYE61_06370) - 1271592..1271777 (+) 186 WP_095309486.1 hypothetical protein -
  NYE61_RS06375 (NYE61_06375) pepF 1271825..1273636 (-) 1812 WP_095309488.1 oligoendopeptidase F Regulator
  NYE61_RS06380 (NYE61_06380) - 1273731..1274924 (-) 1194 WP_095309490.1 competence protein CoiA family protein -
  NYE61_RS06385 (NYE61_06385) - 1275100..1276392 (-) 1293 WP_303447994.1 DUF5068 domain-containing protein -
  NYE61_RS06390 (NYE61_06390) mecA 1276539..1277231 (-) 693 WP_095309492.1 adaptor protein MecA -
  NYE61_RS06395 (NYE61_06395) - 1277689..1278090 (-) 402 WP_095309494.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69554.99 Da        Isoelectric Point: 4.6422

>NTDB_id=966463 NYE61_RS06375 WP_095309488.1 1271825..1273636(-) (pepF) [Oceanobacillus sp. FSL W7-1304]
MAKTTKELPKRSDIPVESTWRLEDIFATDELWQEELKKLQNDIPKAEAYKGKLSESPDALYDLLKLQDELFERLGKLYTY
SHMRYDQDTTNSFYQGLNAQADMVLTQASSVMSYIVPEVLQMDEAKIKQFLEEKEELNFYKKVLDEINRGRPHALSEKEE
ALLAEASEPLSSSSQTFGMLNNADLTFPSIINENGEEVDLTHGRYSTFLESKDRRVREDAFTKVYDTYGNFKNTFASTLS
GAVKTHNFSAKVRNYESARQAALDNNNIPEQVYDNLVEAVNEKLPLLHRYTELRKKVLKLDELHMYDLYTPLVKEVEMKV
SYEEAKDFMFKGLSPLGSEYGEILKEAFENRWIDVEENKGKRSGAYSSGSYATNPYILMNWQDDVNNTFTLAHELGHSVH
SYYTRKTQPFRYGDYSIFVAEVASTTNEALLNDYLLNNLEDEKQKLYILNHFLEGFRGTVFRQTMFAEFEHEIHVRAKDG
EALTADKLTEIYYDLNKKYYGEAVVSDEAIGLEWARIPHFYYNYYVYQYATGYSAATALANNILEGKEGAVDRYLDFLKA
GSSDYPIEVLKKAGVDMTSKQPILDALDVFEEKLNEMERMLLG

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=966463 NYE61_RS06375 WP_095309488.1 1271825..1273636(-) (pepF) [Oceanobacillus sp. FSL W7-1304]
ATGGCAAAAACCACAAAGGAATTACCAAAACGCAGTGACATACCAGTTGAATCTACATGGAGATTAGAGGATATCTTTGC
CACTGATGAATTGTGGCAGGAAGAATTAAAAAAATTGCAAAATGATATTCCAAAAGCAGAAGCATATAAAGGGAAATTAT
CAGAGTCTCCAGATGCCTTATATGATTTGTTGAAACTACAGGATGAACTTTTTGAGCGCCTTGGAAAATTATATACATAT
TCGCATATGCGATATGATCAGGATACAACCAATTCCTTTTATCAAGGCTTAAATGCTCAAGCGGATATGGTGCTAACTCA
AGCATCAAGTGTAATGAGTTATATTGTTCCAGAAGTGCTTCAAATGGATGAGGCTAAAATTAAGCAATTTCTTGAAGAAA
AAGAAGAACTAAATTTTTATAAAAAAGTATTGGATGAAATTAACCGCGGGCGTCCACACGCATTAAGCGAGAAAGAAGAG
GCGTTGCTTGCCGAAGCATCCGAGCCTTTATCAAGCTCTTCGCAGACATTTGGTATGCTTAATAACGCTGATTTAACCTT
TCCTTCAATTATCAACGAGAATGGGGAAGAGGTTGATCTTACACATGGAAGATACTCTACATTTTTAGAATCAAAGGATC
GTCGTGTTCGAGAAGATGCGTTCACTAAGGTATATGACACGTATGGTAATTTTAAAAATACATTTGCTTCAACACTTAGT
GGAGCAGTGAAAACCCATAATTTCTCTGCCAAAGTTCGAAATTATGAATCTGCAAGACAGGCTGCACTGGATAACAATAA
TATACCTGAACAAGTTTATGATAATTTAGTCGAGGCTGTTAATGAAAAGCTTCCATTATTGCACCGTTATACAGAGCTGC
GTAAAAAAGTATTAAAGCTTGATGAATTGCATATGTACGATTTGTACACACCTTTGGTCAAAGAAGTTGAAATGAAGGTT
TCCTATGAAGAGGCTAAAGATTTTATGTTTAAAGGGTTATCTCCACTCGGGAGTGAATATGGAGAAATTCTAAAAGAAGC
TTTTGAAAATCGCTGGATCGATGTAGAAGAGAATAAAGGAAAACGAAGCGGAGCATATTCTTCTGGATCATATGCGACAA
ATCCATATATATTGATGAACTGGCAAGATGATGTGAACAATACGTTTACATTAGCACATGAGCTAGGTCATTCTGTTCAT
AGCTACTATACAAGAAAAACCCAGCCTTTCCGCTATGGAGATTACTCCATTTTTGTAGCTGAGGTTGCATCTACGACAAA
TGAAGCATTGTTAAATGATTATTTATTAAATAATTTAGAAGATGAAAAACAAAAGCTATATATTTTAAATCATTTCTTAG
AAGGCTTCCGCGGAACGGTATTCCGTCAAACGATGTTCGCTGAATTCGAGCATGAGATCCATGTAAGAGCAAAAGACGGA
GAAGCACTTACTGCGGATAAGCTAACCGAAATCTATTATGATCTAAACAAAAAATATTATGGAGAAGCAGTTGTTTCTGA
TGAAGCAATCGGACTGGAATGGGCAAGAATTCCACATTTCTATTACAACTATTATGTATACCAGTATGCAACAGGATATT
CTGCTGCGACGGCACTTGCGAATAACATATTAGAAGGAAAAGAAGGTGCAGTTGATCGTTATCTTGATTTCCTGAAAGCT
GGAAGTAGTGATTATCCAATCGAAGTGTTGAAAAAAGCTGGGGTTGATATGACTTCAAAACAACCGATTTTAGATGCACT
TGATGTGTTTGAGGAAAAATTGAATGAAATGGAACGCATGTTATTAGGATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(208-587)

Oligopeptidase F (Peptidase_M3_N)

(118-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.915

98.01

0.489

Multiple sequence alignment