Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NYE61_RS03555 Genome accession   NZ_CP150211
Coordinates   676177..678495 (-) Length   772 a.a.
NCBI ID   WP_303447327.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL W7-1304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 671177..683495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE61_RS03535 (NYE61_03535) - 671276..671542 (-) 267 WP_095307133.1 IreB family regulatory phosphoprotein -
  NYE61_RS03540 (NYE61_03540) alaS 671692..674337 (-) 2646 WP_303447323.1 alanine--tRNA ligase -
  NYE61_RS03545 (NYE61_03545) - 674798..675865 (-) 1068 WP_095307136.1 AI-2E family transporter -
  NYE61_RS03550 (NYE61_03550) - 675922..676110 (-) 189 WP_095307137.1 hypothetical protein -
  NYE61_RS03555 (NYE61_03555) recD2 676177..678495 (-) 2319 WP_303447327.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NYE61_RS03560 (NYE61_03560) - 678676..679344 (-) 669 WP_095307140.1 tetratricopeptide repeat protein -
  NYE61_RS03565 (NYE61_03565) mnmA 679360..680472 (-) 1113 WP_095307141.1 tRNA 2-thiouridine(34) synthase MnmA -
  NYE61_RS03570 (NYE61_03570) - 680583..681725 (-) 1143 WP_303447330.1 cysteine desulfurase family protein -
  NYE61_RS03575 (NYE61_03575) - 681868..682287 (-) 420 WP_095307143.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 772 a.a.        Molecular weight: 87701.07 Da        Isoelectric Point: 4.9824

>NTDB_id=966456 NYE61_RS03555 WP_303447327.1 676177..678495(-) (recD2) [Oceanobacillus sp. FSL W7-1304]
MEQDQQTIDERGYIKGEILYTIFHNETEHFSIIKIRVQDTNEDFKEKEIVAKGYFSNLQEQTPYFFYGTFERHARFGLQY
KVSSYKTIVPNTKDGLVAYLSSDLFYGVGKKTAERIVEHLGETAITKILNDGSILQGVPGLKKETAERLASSIQENQGFE
HVAVYLANYGVGLKMAQRIYKEYKDEAIEVLEEDPYQYVFTIEGFGFRTADDIAKQNGLSMIHPNRIGAGCIYILQKCIQ
DGHVYLPIELCVDQVGELLSIHSEEVRIITEQMEELNKEKKVIMKDNKVYLPSLYYAEDGFAANLKRIMEKPIKDETPLA
EMMKITGDIEESEVLSYGKEQFSAINQSLHSKVMILTGGPGTGKTTVIKGILKAYATIHDVSLNPKDYDDPAEFPFVLTA
PTGRAAKRLNESTGLPALTIHRLLGWNGSNGFNKDEQEQLSGKILIVDEFSMVDIWLANSLFKAIPDEMQVLLVGDEDQL
PSVGPGQVLTDLLNSKLLPLVRLNEVYRQKEGSKIIQLAHEIKNNQLTVQSLQNDKDFSFIACNEHQMLQVVTSIFTKAK
EKGLDVKEIQVLAPMYRSQAGITMINQQLQQLINPKTKTKREVKYHDVVYRVGDKVIQLVNQPEDGVYNGDIGEVVAIFR
EEENVDNVEQVVIAFDDKEVVYERNNYINFTHAYCISIHKSQGSEFPIVILPVVSTYYRMLRKNLLYTAITRSKESLIIC
GEQQAFLKGIQTIDTNKRYTSLKGQLSGRMKDLKMEESEEVDEEEISPYDFM

Nucleotide


Download         Length: 2319 bp        

>NTDB_id=966456 NYE61_RS03555 WP_303447327.1 676177..678495(-) (recD2) [Oceanobacillus sp. FSL W7-1304]
ATGGAACAGGATCAACAAACAATAGATGAACGAGGGTATATTAAAGGTGAAATTTTGTATACCATTTTTCATAATGAAAC
AGAACATTTTTCTATCATTAAGATCCGAGTTCAGGATACAAATGAAGATTTTAAAGAAAAAGAGATAGTTGCAAAAGGCT
ATTTTTCCAACCTCCAAGAGCAAACCCCCTATTTCTTTTATGGAACGTTTGAAAGACATGCCAGGTTTGGACTGCAGTAT
AAGGTTTCTTCCTATAAAACGATTGTACCAAATACAAAGGATGGTTTAGTAGCCTATTTATCAAGCGATCTCTTTTATGG
TGTTGGGAAAAAGACTGCGGAACGAATCGTTGAGCATTTAGGCGAAACAGCAATCACCAAAATTTTGAATGATGGAAGTA
TTTTGCAGGGAGTTCCAGGACTAAAAAAAGAAACTGCTGAACGTTTAGCATCGAGTATACAGGAGAATCAAGGATTTGAA
CATGTTGCAGTTTATTTGGCCAACTATGGTGTTGGTTTAAAAATGGCACAGCGTATTTATAAAGAATATAAAGATGAAGC
TATTGAAGTTTTAGAAGAAGATCCGTACCAGTATGTGTTCACAATAGAAGGATTTGGGTTTCGGACAGCAGATGACATCG
CAAAACAGAATGGATTATCAATGATACACCCAAACCGAATTGGAGCTGGGTGTATTTATATCCTGCAAAAATGTATTCAG
GATGGTCATGTATATCTTCCCATAGAACTTTGTGTAGACCAAGTTGGAGAGCTACTTAGCATCCATTCCGAAGAGGTTCG
TATTATTACTGAACAAATGGAAGAATTGAATAAAGAGAAGAAAGTTATCATGAAAGATAATAAGGTGTACCTACCTTCGC
TTTATTATGCAGAAGATGGCTTTGCAGCGAATTTAAAACGGATTATGGAGAAGCCCATTAAAGATGAAACACCGCTAGCT
GAAATGATGAAAATAACGGGTGATATTGAAGAATCGGAAGTACTTAGCTATGGGAAAGAACAGTTTTCTGCGATTAATCA
GTCGTTGCATTCAAAAGTAATGATTCTAACCGGTGGACCTGGAACTGGAAAGACAACGGTTATTAAAGGGATTTTAAAAG
CATATGCGACAATACATGATGTTTCACTTAATCCGAAAGATTATGATGATCCAGCTGAATTTCCATTCGTTTTAACTGCG
CCAACAGGCAGAGCTGCAAAACGCTTGAATGAGTCGACTGGTCTTCCAGCACTGACCATTCATAGACTACTGGGTTGGAA
TGGGAGCAATGGGTTCAATAAGGATGAACAAGAACAGCTATCCGGAAAAATTCTAATTGTTGATGAGTTTTCCATGGTAG
ATATTTGGCTTGCGAACAGTTTATTTAAGGCAATTCCAGATGAAATGCAAGTATTGCTTGTTGGTGATGAAGACCAGCTT
CCATCTGTTGGACCTGGACAAGTATTAACAGATTTATTAAATAGTAAATTACTACCGCTAGTTCGTCTGAATGAAGTATA
CCGCCAAAAAGAAGGATCGAAAATCATTCAGCTCGCACATGAAATAAAAAATAATCAACTGACAGTCCAATCGTTACAGA
ATGATAAAGATTTTAGTTTTATTGCATGTAATGAACATCAAATGCTTCAAGTAGTAACATCAATTTTCACAAAGGCTAAA
GAGAAAGGACTTGATGTCAAGGAGATTCAAGTATTGGCTCCTATGTATCGAAGTCAGGCAGGGATCACGATGATTAATCA
ACAGTTACAGCAGTTGATTAATCCAAAAACAAAAACGAAGCGGGAAGTAAAGTACCATGATGTGGTTTACCGAGTTGGAG
ATAAAGTGATTCAGCTTGTCAATCAACCAGAGGATGGCGTATATAATGGCGATATTGGAGAAGTTGTTGCTATTTTTCGA
GAGGAAGAGAATGTAGATAATGTGGAGCAGGTTGTGATTGCTTTTGATGATAAAGAAGTTGTTTATGAACGAAACAACTA
TATTAATTTTACACATGCTTATTGTATTTCGATTCATAAGTCACAAGGCAGTGAATTTCCAATTGTAATTCTTCCGGTTG
TATCAACCTATTATCGAATGCTGCGAAAAAATTTATTGTACACAGCAATTACGAGAAGCAAAGAGTCTTTAATTATTTGT
GGTGAACAACAGGCATTTTTAAAAGGGATTCAAACAATTGATACAAATAAACGCTATACGTCCTTGAAAGGGCAATTAAG
TGGAAGAATGAAAGATTTGAAAATGGAAGAATCCGAAGAAGTGGATGAGGAAGAAATCTCACCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-720)

AAA domain (AAA_30)

(337-544)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

47.335

100

0.483

Multiple sequence alignment