Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NYE61_RS02410 Genome accession   NZ_CP150211
Coordinates   479645..481345 (-) Length   566 a.a.
NCBI ID   WP_095306948.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL W7-1304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 474645..486345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE61_RS02390 (NYE61_02390) - 475320..475562 (+) 243 WP_118889632.1 DUF2627 family protein -
  NYE61_RS02395 (NYE61_02395) - 475672..477018 (+) 1347 WP_095306944.1 aspartate kinase -
  NYE61_RS02400 (NYE61_02400) spo0A 477151..477930 (-) 780 WP_095306945.1 sporulation transcription factor Spo0A -
  NYE61_RS02405 (NYE61_02405) spoIVB 478170..479426 (-) 1257 WP_095306946.1 SpoIVB peptidase -
  NYE61_RS02410 (NYE61_02410) recN 479645..481345 (-) 1701 WP_095306948.1 DNA repair protein RecN Machinery gene
  NYE61_RS02415 (NYE61_02415) argR 481413..481862 (-) 450 WP_095306950.1 transcriptional regulator ArgR -
  NYE61_RS02420 (NYE61_02420) - 481956..482777 (-) 822 WP_095306951.1 TlyA family RNA methyltransferase -
  NYE61_RS02425 (NYE61_02425) - 482914..483798 (-) 885 WP_095306952.1 polyprenyl synthetase family protein -
  NYE61_RS02430 (NYE61_02430) - 483802..484032 (-) 231 WP_095306953.1 exodeoxyribonuclease VII small subunit -
  NYE61_RS02435 (NYE61_02435) xseA 484022..485377 (-) 1356 WP_095306954.1 exodeoxyribonuclease VII large subunit -
  NYE61_RS02440 (NYE61_02440) folD 485367..486227 (-) 861 WP_118889640.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 64570.58 Da        Isoelectric Point: 4.7891

>NTDB_id=966454 NYE61_RS02410 WP_095306948.1 479645..481345(-) (recN) [Oceanobacillus sp. FSL W7-1304]
MLTELSIRDFAIIEQISITFNEGLTVLTGETGAGKSIIIDAIQLLAGGRGSVEYVRHRAKKAEIEGLFTIENKTHPIYDV
GSQYGIEISDNQVVLQRVITGSGKSICRVNSKLVTLAILREFGKTLIDIHSQHETQSLMDAENHLDFLDLYEPQSITKAK
EAYLEHYDKLVRLKNRYKKLNDNEQETAHRLDLLEFQMKELEQAELSPDEDTQLEEERKALANYERIHTALHDAYHALYG
EQRGLDWLNQAQLSLQENSKYDDYIAAKSEEFSNHYYAMEELTYELRNHIDTLQFDPERLNEIESRLDEINRLKRKYGNT
VNDIIEYMATIEEEIEQITNKDSHLNALLEQIEETEKDAMLEAEHLHELRKSAADCLTEDIHAEMKGLYLEKATFAIAFD
DESNTKAHLHKNGFDHVRFLISTNRGEPLKDLTKVASGGELSRIMLALKNIFSKHQGVTSVIFDEVDTGVSGRVAQAIAE
KIYQISNDSQVLCITHLPQVAAMADTHKFIEKNEKDNRTATSVKELSELEQIEELSRMITGTKLTETAKDHAKEMLELAN
AFKSNL

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=966454 NYE61_RS02410 WP_095306948.1 479645..481345(-) (recN) [Oceanobacillus sp. FSL W7-1304]
ATGCTTACAGAGCTGTCTATTCGTGATTTTGCAATCATCGAACAGATTTCCATAACATTTAATGAAGGTCTTACCGTATT
GACTGGAGAAACTGGTGCAGGAAAATCGATTATAATAGATGCTATACAGTTATTAGCAGGAGGACGTGGTTCTGTAGAAT
ATGTAAGGCATCGAGCCAAAAAAGCTGAAATAGAAGGTTTATTTACAATAGAAAATAAAACCCATCCAATATATGATGTT
GGAAGCCAATATGGAATAGAAATTTCTGATAATCAAGTAGTATTACAACGAGTTATTACAGGATCTGGAAAAAGCATTTG
TCGTGTAAATAGCAAGCTAGTCACACTTGCAATACTGCGTGAATTTGGAAAGACACTAATCGACATCCATAGTCAGCATG
AAACACAATCATTAATGGATGCAGAAAATCATTTGGATTTCTTAGACTTGTATGAACCACAATCAATAACAAAAGCAAAA
GAAGCATACTTGGAGCACTATGATAAGTTGGTTCGCTTAAAAAATAGATATAAAAAGCTAAATGATAATGAGCAAGAGAC
AGCTCATCGTTTAGACTTATTAGAGTTTCAAATGAAGGAGCTTGAACAAGCAGAACTTAGTCCTGATGAGGATACACAGC
TTGAAGAAGAGAGAAAAGCACTCGCGAATTATGAGCGGATTCACACTGCCCTGCATGATGCCTATCATGCATTATACGGA
GAACAAAGAGGATTGGATTGGTTAAATCAGGCGCAGCTTAGCCTTCAGGAAAATAGTAAGTATGATGATTATATCGCAGC
GAAATCAGAAGAGTTTTCCAATCATTATTATGCAATGGAAGAGCTAACCTATGAGCTGCGCAATCATATTGATACACTTC
AATTTGATCCAGAACGTTTAAATGAAATTGAATCAAGATTAGATGAAATAAATAGGCTAAAACGAAAATACGGCAATACG
GTAAATGATATTATTGAATATATGGCAACGATAGAAGAAGAGATAGAGCAGATAACGAACAAGGATTCTCATCTAAACGC
TTTGCTTGAACAGATTGAAGAAACCGAAAAGGACGCTATGCTTGAAGCTGAGCACCTACATGAACTCAGAAAAAGTGCTG
CAGATTGTCTAACAGAAGATATACATGCTGAGATGAAAGGACTTTATTTAGAAAAAGCTACTTTTGCAATTGCTTTTGAT
GATGAAAGTAATACGAAGGCTCATCTCCACAAAAACGGATTCGATCATGTACGTTTTCTTATTTCAACCAATCGTGGCGA
ACCGCTAAAGGATTTAACGAAGGTAGCCTCTGGTGGAGAGCTTTCACGAATTATGCTTGCATTAAAGAATATTTTTTCCA
AGCATCAAGGCGTGACAAGCGTTATATTTGATGAAGTTGACACTGGGGTTAGCGGAAGAGTTGCACAGGCAATTGCTGAA
AAGATTTATCAAATCTCAAATGATTCTCAAGTGCTATGTATTACACACCTTCCACAAGTGGCCGCTATGGCAGACACCCA
TAAATTTATTGAGAAAAACGAAAAAGATAACCGAACCGCAACAAGTGTAAAAGAACTATCTGAATTAGAACAAATAGAAG
AATTAAGTCGTATGATTACGGGAACAAAATTGACTGAAACTGCGAAAGATCACGCAAAGGAAATGCTTGAACTTGCAAAT
GCATTTAAATCAAATTTATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.167

100

0.551

Multiple sequence alignment