Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MKX50_RS23565 Genome accession   NZ_CP150207
Coordinates   5267977..5268930 (-) Length   317 a.a.
NCBI ID   WP_283926174.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL W8-0186     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5262977..5273930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX50_RS23550 (MKX50_23550) - 5265245..5266240 (-) 996 WP_339157905.1 siderophore ABC transporter substrate-binding protein -
  MKX50_RS23555 (MKX50_23555) - 5266285..5267043 (-) 759 WP_283926172.1 ABC transporter ATP-binding protein -
  MKX50_RS23560 (MKX50_23560) - 5267037..5267987 (-) 951 WP_339157906.1 iron chelate uptake ABC transporter family permease subunit -
  MKX50_RS23565 (MKX50_23565) ceuB 5267977..5268930 (-) 954 WP_283926174.1 ABC transporter permease Machinery gene
  MKX50_RS23570 (MKX50_23570) - 5269076..5269216 (-) 141 WP_339157907.1 hypothetical protein -
  MKX50_RS23575 (MKX50_23575) - 5269327..5270331 (-) 1005 WP_339157908.1 Gfo/Idh/MocA family oxidoreductase -
  MKX50_RS23580 (MKX50_23580) - 5270501..5270632 (+) 132 WP_339157909.1 DUF4023 domain-containing protein -
  MKX50_RS23585 (MKX50_23585) - 5270723..5270905 (-) 183 WP_213591880.1 hypothetical protein -
  MKX50_RS23590 (MKX50_23590) - 5271022..5271750 (-) 729 WP_339157910.1 DUF6081 family protein -
  MKX50_RS23595 (MKX50_23595) - 5271781..5272701 (-) 921 WP_213591256.1 prenyltransferase -
  MKX50_RS23600 (MKX50_23600) - 5272878..5273384 (+) 507 WP_213591257.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34648.66 Da        Isoelectric Point: 9.8337

>NTDB_id=966382 MKX50_RS23565 WP_283926174.1 5267977..5268930(-) (ceuB) [Paenibacillus sp. FSL W8-0186]
MKKTYLITALIVLSVVSLLIGAKTTSLMDLLRLDPEQWEIMRISRFPRLISIIIAGVSMSIVGLIMQQLTRNKFVSPTTA
GTMDSAGFGIMVSMLLFSSAGPLGKIAVAFVFAMLGTLIFMKILDKVKYKDSIFIPLVGLMFGGIVSSATTFFAYKYDLI
QSMNAWLFGDFSMVMQGRYELLYISVPLVAAAYFYANKFTVAGMGEEFSVNLGLNYKQVVNIGLFIVALVTSVVVLTVGS
IPFIGLIVPNLVTIFQGDNLKKNLSGTALLGAVFVLACDILGRVIIYPYEVPIGLTVGVIGSGVFLYLLMRRKTYEH

Nucleotide


Download         Length: 954 bp        

>NTDB_id=966382 MKX50_RS23565 WP_283926174.1 5267977..5268930(-) (ceuB) [Paenibacillus sp. FSL W8-0186]
ATGAAGAAGACATATCTGATAACAGCGCTAATCGTATTATCCGTCGTTTCGCTCTTGATCGGAGCCAAGACAACTTCATT
GATGGACTTGCTTCGCCTAGATCCGGAACAGTGGGAAATCATGCGGATTAGCCGGTTTCCTAGACTGATCAGCATTATTA
TCGCCGGGGTAAGCATGAGCATCGTCGGGTTAATTATGCAGCAGCTGACGCGCAACAAATTCGTCTCGCCTACGACGGCG
GGAACAATGGATTCCGCAGGGTTCGGCATCATGGTATCGATGCTTCTGTTCTCTTCTGCGGGACCGCTTGGCAAAATCGC
TGTTGCCTTCGTGTTTGCGATGCTTGGCACCCTCATTTTCATGAAAATACTCGACAAGGTGAAATACAAGGATTCGATCT
TCATTCCGCTGGTCGGGTTGATGTTCGGCGGAATTGTCAGCTCGGCGACGACATTTTTCGCATACAAGTATGATCTGATT
CAGAGTATGAATGCATGGCTGTTTGGCGATTTCTCCATGGTCATGCAGGGACGGTACGAGCTTCTTTACATAAGCGTCCC
TCTTGTAGCCGCGGCTTATTTTTATGCGAATAAATTTACGGTTGCGGGCATGGGCGAAGAGTTCTCCGTCAATCTTGGAC
TGAATTATAAGCAGGTCGTCAATATAGGGCTCTTTATCGTGGCGCTGGTCACCTCGGTTGTTGTGCTGACGGTCGGTTCG
ATTCCTTTCATCGGTCTCATCGTGCCGAACCTGGTGACGATCTTCCAAGGGGACAACCTGAAGAAGAACCTGTCGGGTAC
TGCGCTGCTAGGAGCTGTATTCGTTCTGGCGTGCGATATTCTGGGAAGGGTCATTATTTACCCGTATGAGGTTCCCATCG
GTCTGACCGTGGGCGTTATCGGCAGCGGCGTTTTCCTGTACTTGCTAATGAGGAGAAAGACATATGAGCATTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.376

98.107

0.524

Multiple sequence alignment