Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MKY48_RS27830 Genome accession   NZ_CP150206
Coordinates   6146658..6147098 (-) Length   146 a.a.
NCBI ID   WP_339291746.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL W8-0187     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 6141658..6152098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY48_RS27805 (MKY48_27805) - 6142640..6143776 (-) 1137 WP_339291745.1 HAMP domain-containing sensor histidine kinase -
  MKY48_RS27810 (MKY48_27810) - 6143769..6144449 (-) 681 WP_076324703.1 response regulator transcription factor -
  MKY48_RS27815 (MKY48_27815) - 6144555..6145121 (-) 567 WP_076324704.1 methyltransferase domain-containing protein -
  MKY48_RS27820 (MKY48_27820) - 6145166..6145645 (-) 480 WP_076324705.1 DedA family protein -
  MKY48_RS27825 (MKY48_27825) yjcZ 6146051..6146161 (-) 111 WP_083659774.1 sporulation protein YjcZ -
  MKY48_RS27830 (MKY48_27830) nucA/comI 6146658..6147098 (-) 441 WP_339291746.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MKY48_RS27835 (MKY48_27835) groL 6147325..6148953 (-) 1629 WP_076324708.1 chaperonin GroEL -
  MKY48_RS27840 (MKY48_27840) groES 6149016..6149297 (-) 282 WP_006212454.1 co-chaperone GroES -
  MKY48_RS27845 (MKY48_27845) - 6149575..6150393 (-) 819 WP_339291747.1 nucleotidyltransferase domain-containing protein -
  MKY48_RS27850 (MKY48_27850) tatC 6150694..6151467 (-) 774 WP_098748756.1 twin-arginine translocase subunit TatC -
  MKY48_RS27855 (MKY48_27855) - 6151540..6151776 (-) 237 WP_076324711.1 twin-arginine translocase TatA/TatE family subunit -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16215.15 Da        Isoelectric Point: 4.3837

>NTDB_id=966346 MKY48_RS27830 WP_339291746.1 6146658..6147098(-) (nucA/comI) [Paenibacillus sp. FSL W8-0187]
MKKLFLKFGTAVLSLLLVWLVLNYFPELDDIDVNQPKPGTVVELEFPADRYPETADHIQKAIESGHSEVCTIDRTGADDN
RSSSLKGIPTKKGYDRDEWPMAMCAEGGDGASVEYIDPSDNRGAGSWVGNYLEGYPDGTQVHFIFR

Nucleotide


Download         Length: 441 bp        

>NTDB_id=966346 MKY48_RS27830 WP_339291746.1 6146658..6147098(-) (nucA/comI) [Paenibacillus sp. FSL W8-0187]
ATGAAAAAGTTATTCTTGAAATTTGGAACAGCGGTCTTATCCTTGTTATTGGTTTGGTTGGTCCTTAATTATTTTCCGGA
GTTAGATGACATTGATGTAAACCAACCAAAACCGGGTACCGTTGTCGAATTGGAGTTTCCAGCGGATAGATATCCTGAGA
CAGCGGATCACATACAAAAGGCCATTGAATCCGGTCATTCCGAAGTTTGTACCATTGATCGAACTGGTGCAGATGATAAC
AGAAGTTCTTCGCTAAAAGGAATCCCTACAAAAAAAGGATATGATCGGGATGAGTGGCCGATGGCCATGTGTGCCGAAGG
CGGGGACGGTGCAAGTGTCGAATACATAGATCCATCTGACAATCGAGGAGCTGGAAGCTGGGTAGGTAACTATTTGGAGG
GATACCCGGACGGTACCCAAGTACATTTCATTTTTAGATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(50-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

70.874

70.548

0.5

Multiple sequence alignment