Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MKY48_RS22310 Genome accession   NZ_CP150206
Coordinates   4966899..4967852 (-) Length   317 a.a.
NCBI ID   WP_076325075.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL W8-0187     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4961899..4972852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY48_RS22290 (MKY48_22290) - 4962433..4963857 (-) 1425 WP_339290879.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  MKY48_RS22295 (MKY48_22295) - 4964034..4965005 (-) 972 WP_339290880.1 siderophore ABC transporter substrate-binding protein -
  MKY48_RS22300 (MKY48_22300) - 4965207..4965965 (-) 759 WP_076325073.1 ABC transporter ATP-binding protein -
  MKY48_RS22305 (MKY48_22305) - 4965962..4966909 (-) 948 WP_076325074.1 iron chelate uptake ABC transporter family permease subunit -
  MKY48_RS22310 (MKY48_22310) ceuB 4966899..4967852 (-) 954 WP_076325075.1 ABC transporter permease Machinery gene
  MKY48_RS22315 (MKY48_22315) - 4968379..4968981 (+) 603 WP_339290883.1 nitroreductase family protein -
  MKY48_RS22320 (MKY48_22320) - 4969352..4969957 (+) 606 WP_339266344.1 YkoF family thiamine/hydroxymethylpyrimidine-binding protein -
  MKY48_RS22325 (MKY48_22325) - 4970029..4970127 (-) 99 WP_076325078.1 sporulation protein YjcZ -
  MKY48_RS22330 (MKY48_22330) - 4970245..4970943 (-) 699 WP_339290886.1 nucleotidyltransferase domain-containing protein -
  MKY48_RS22335 (MKY48_22335) - 4971091..4971813 (+) 723 WP_339290888.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34972.43 Da        Isoelectric Point: 10.0377

>NTDB_id=966343 MKY48_RS22310 WP_076325075.1 4966899..4967852(-) (ceuB) [Paenibacillus sp. FSL W8-0187]
MKIRYLFAAVVVLSIISLFIGVKDISPLQLFSMTEQQQHIMLVSRIPRLVSLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFTTSGPLIKMLVAFVFALAGTFIFMKILDRIKFKDAIFIPLVGLMFGNIVSSIATFFAYKYDLI
QNMSAWLQGDFSMIMKGQYEMLYISIPLLILAYLFANKFTVAGMGEEFATNLGLHYRRVVNLGLVIVALVTASVVLTVGV
IPFLGLIIPNIVSLYLGDHLKKSLSHTALLGAGFVLFCDILGRIIIYPYEIPISLTVGVLGSGIFIFLLMRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=966343 MKY48_RS22310 WP_076325075.1 4966899..4967852(-) (ceuB) [Paenibacillus sp. FSL W8-0187]
ATGAAGATTAGATACTTATTTGCAGCCGTTGTGGTACTCTCGATAATTTCATTATTTATTGGAGTTAAAGATATCTCGCC
ACTGCAACTATTCTCGATGACAGAACAACAACAGCATATTATGCTTGTAAGCCGGATTCCTAGGCTTGTCAGTCTTATAT
TGGCGGGTGTCAGCATGAGTATCTGCGGATTGATCATGCAGCAGCTCAGCCGCAATAAGTTCGTATCGCCGACCACAGCA
GGTACGATGGACTCTGCCAGACTGGGGATTTTGGTAGCCATGCTCGTCTTCACGACAAGCGGTCCGCTTATCAAAATGCT
CGTGGCATTTGTATTCGCTCTGGCAGGAACCTTTATCTTCATGAAGATACTGGATCGGATTAAGTTCAAGGATGCGATCT
TCATCCCGCTCGTAGGGCTGATGTTTGGTAATATCGTCAGTTCGATAGCCACCTTCTTTGCATACAAATATGATCTTATT
CAGAATATGTCCGCATGGCTTCAGGGTGATTTTTCCATGATCATGAAGGGCCAGTATGAAATGCTCTATATTAGTATCCC
GCTTTTGATTCTGGCGTATCTGTTTGCCAACAAGTTTACGGTGGCCGGAATGGGAGAGGAGTTTGCAACCAACCTGGGTC
TTCACTACCGGAGAGTTGTGAATCTGGGATTGGTCATCGTGGCGCTGGTTACGGCATCTGTTGTGCTGACGGTCGGCGTG
ATTCCGTTTCTTGGTCTGATCATACCTAATATTGTCAGTTTGTACTTAGGAGACCACTTAAAAAAAAGCCTTTCGCATAC
CGCGCTGCTGGGGGCCGGGTTCGTACTGTTCTGTGACATCCTGGGCCGGATCATTATTTATCCCTATGAAATTCCGATTA
GTCTAACCGTGGGCGTACTCGGAAGCGGTATATTCATTTTCTTACTGATGAGGAGAAAGGCTTATGACTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.603

99.369

0.543

Multiple sequence alignment