Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MKY58_RS25995 Genome accession   NZ_CP150205
Coordinates   5625208..5626161 (-) Length   317 a.a.
NCBI ID   WP_212951155.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL W8-0194     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5620208..5631161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY58_RS25975 (MKY58_25975) - 5620838..5621998 (-) 1161 WP_339322638.1 winged helix-turn-helix domain-containing protein -
  MKY58_RS25980 (MKY58_25980) - 5622329..5623327 (-) 999 WP_339322639.1 siderophore ABC transporter substrate-binding protein -
  MKY58_RS25985 (MKY58_25985) - 5623512..5624270 (-) 759 WP_339322640.1 ABC transporter ATP-binding protein -
  MKY58_RS25990 (MKY58_25990) - 5624267..5625211 (-) 945 WP_339322641.1 iron chelate uptake ABC transporter family permease subunit -
  MKY58_RS25995 (MKY58_25995) ceuB 5625208..5626161 (-) 954 WP_212951155.1 ABC transporter permease Machinery gene
  MKY58_RS26000 (MKY58_26000) - 5626408..5627112 (-) 705 WP_339322642.1 type II CAAX endopeptidase family protein -
  MKY58_RS26005 (MKY58_26005) - 5627221..5628147 (+) 927 WP_339322643.1 DUF4023 family protein -
  MKY58_RS26010 (MKY58_26010) - 5628514..5629116 (+) 603 WP_339322644.1 DedA family protein -
  MKY58_RS26015 (MKY58_26015) - 5629135..5630952 (-) 1818 WP_339322645.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35156.29 Da        Isoelectric Point: 9.9924

>NTDB_id=966314 MKY58_RS25995 WP_212951155.1 5625208..5626161(-) (ceuB) [Paenibacillus sp. FSL W8-0194]
MKIWYLWAAFIVLSIISLFVGVKDIAPWDLFHLTPEQQQVLWISRLPRLVSIIIAGTSMSIIGLIMQQLTRNKFVSPTTA
GTMDSARFGILVAMMLFSNASTLEKILVAFVFALLGTFIFMRILDRVKFKDAIFIPLVGLMFGNIVSSITTFFAYKNDLI
QNMSAWLQGDFSTVLKGRYEMLYVSIPLLIIAYLFANRFTIAGMGEEFAVNLGLNYKAVVNIGLVLVAAVSSVVILTVGT
IPFLGLVVPNIVTMYQGDHLKKNLTHTALLGAVFVLFCDILGRIIIYPYEISIGLTVGVLGSAIFIFLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=966314 MKY58_RS25995 WP_212951155.1 5625208..5626161(-) (ceuB) [Paenibacillus sp. FSL W8-0194]
ATGAAAATTTGGTACTTGTGGGCAGCATTCATCGTTTTATCCATCATCTCCCTGTTCGTGGGAGTCAAAGACATCGCGCC
GTGGGATTTGTTCCATCTGACTCCGGAGCAGCAGCAGGTACTGTGGATCAGCCGTCTGCCAAGGCTCGTCAGCATTATCA
TCGCCGGCACCAGCATGAGCATCATCGGCCTGATCATGCAGCAGCTGACGCGCAACAAATTCGTTTCGCCGACGACGGCG
GGAACGATGGATTCAGCAAGGTTCGGCATATTGGTCGCGATGATGCTGTTTTCGAACGCGAGCACGCTGGAGAAAATTTT
GGTCGCGTTCGTGTTTGCGCTGCTGGGCACGTTCATTTTTATGCGCATTCTGGACCGGGTGAAGTTCAAGGATGCGATTT
TCATTCCGTTGGTGGGACTGATGTTCGGCAATATCGTCAGTTCGATCACGACCTTTTTCGCTTACAAAAACGACCTGATC
CAGAATATGTCCGCTTGGCTGCAGGGCGATTTCTCGACGGTGCTGAAAGGGCGCTACGAAATGCTGTACGTCAGCATCCC
GCTCCTCATCATCGCTTACCTGTTCGCGAACCGCTTCACCATCGCGGGCATGGGCGAGGAATTCGCGGTCAACCTGGGCC
TCAACTACAAGGCCGTCGTCAACATCGGGCTGGTGCTGGTCGCGGCGGTGTCGTCGGTCGTCATTTTGACGGTCGGCACG
ATTCCGTTCCTTGGCCTGGTCGTCCCGAACATCGTGACGATGTACCAGGGCGACCATTTGAAAAAAAACCTGACGCATAC
CGCCCTGCTCGGAGCCGTGTTCGTCCTGTTCTGCGACATTCTGGGCCGGATCATCATTTATCCGTATGAGATCTCCATCG
GCCTGACGGTCGGCGTTTTGGGCAGCGCGATCTTTATTTTCCTACTCCTGAGAAGAAAGGCATATGCGTCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.341

98.107

0.533

Multiple sequence alignment