Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   AABJ90_RS09325 Genome accession   NZ_AP028964
Coordinates   1780830..1782320 (+) Length   496 a.a.
NCBI ID   WP_121590927.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1775830..1787320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS09305 (BsubNA05_17990) serA 1776579..1778156 (-) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -
  AABJ90_RS09310 (BsubNA05_18010) fmnP 1778653..1779225 (+) 573 WP_029726755.1 riboflavin transporter FmnP -
  AABJ90_RS09315 (BsubNA05_18020) fer 1779265..1779513 (-) 249 WP_003225461.1 ferredoxin -
  AABJ90_RS09320 (BsubNA05_18030) gmmB 1779779..1780837 (+) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  AABJ90_RS09325 (BsubNA05_18040) recS 1780830..1782320 (+) 1491 WP_121590927.1 ATP-dependent DNA helicase RecQ Machinery gene
  AABJ90_RS09330 (BsubNA05_18050) ypbD 1782347..1782949 (+) 603 WP_038429217.1 CPBP family intramembrane glutamic endopeptidase -
  AABJ90_RS09335 (BsubNA05_18060) ypbE 1782900..1783631 (+) 732 WP_038429216.1 LysM peptidoglycan-binding domain-containing protein -
  AABJ90_RS09340 ypbF 1783694..1784137 (+) 444 WP_003230531.1 YpbF family protein -
  AABJ90_RS09345 (BsubNA05_18070) ypbG 1784224..1785003 (+) 780 WP_131227574.1 metallophosphoesterase -
  AABJ90_RS09350 (BsubNA05_18080) mecB 1785162..1785746 (+) 585 WP_003230533.1 genetic competence negative regulator -
  AABJ90_RS09355 (BsubNA05_18090) gudB 1785902..1787176 (+) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56537.10 Da        Isoelectric Point: 6.4518

>NTDB_id=96629 AABJ90_RS09325 WP_121590927.1 1780830..1782320(+) (recS) [Bacillus subtilis strain NA05 = NBRC 116153]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAVDTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=96629 AABJ90_RS09325 WP_121590927.1 1780830..1782320(+) (recS) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGTGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CCGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGTGATGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment