Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MKY59_RS29165 Genome accession   NZ_CP150203
Coordinates   6452919..6453872 (-) Length   317 a.a.
NCBI ID   WP_236413185.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL W8-0426     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6447919..6458872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY59_RS29145 (MKY59_29145) - 6448376..6449962 (-) 1587 WP_339275060.1 spore germination protein -
  MKY59_RS29150 (MKY59_29150) - 6450179..6451171 (-) 993 WP_339275061.1 siderophore ABC transporter substrate-binding protein -
  MKY59_RS29155 (MKY59_29155) - 6451202..6451960 (-) 759 WP_236413183.1 ABC transporter ATP-binding protein -
  MKY59_RS29160 (MKY59_29160) - 6451957..6452922 (-) 966 WP_290371415.1 iron chelate uptake ABC transporter family permease subunit -
  MKY59_RS29165 (MKY59_29165) ceuB 6452919..6453872 (-) 954 WP_236413185.1 ABC transporter permease Machinery gene
  MKY59_RS29170 (MKY59_29170) - 6454136..6454540 (-) 405 WP_236413187.1 DoxX family protein -
  MKY59_RS29175 (MKY59_29175) - 6454586..6455446 (-) 861 WP_339275062.1 M56 family metallopeptidase -
  MKY59_RS29180 (MKY59_29180) - 6455448..6455864 (-) 417 WP_236413190.1 BlaI/MecI/CopY family transcriptional regulator -
  MKY59_RS29185 (MKY59_29185) - 6456097..6457560 (-) 1464 WP_339275064.1 catalase -
  MKY59_RS29190 (MKY59_29190) - 6457798..6458604 (-) 807 WP_236413192.1 winged helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35118.30 Da        Isoelectric Point: 10.1133

>NTDB_id=966259 MKY59_RS29165 WP_236413185.1 6452919..6453872(-) (ceuB) [Paenibacillus sp. FSL W8-0426]
MKLRYMLVILLVLSFAYIFIGNSDIAPWDLFDLNAVQLQVLQVSRIPRLISILVAGVSMSVIGLIMQQLTRNRFVSPTTA
GTMDSARLGILVTLMWFPGASPLQKMLVAFVFALAGTFIFMRILERVKFKDTVYIALLGLMFGNIMSSITTFFAYKNDLI
QNISSWLQGDFSTIMKGRYELIYISIPLLVIVYLFANRFTLAGMGEDFATNLGLAYRRVVNIGLILVAMVSAVVIITVGT
IPFLGLVVPNIVTLYKGDNLRSTLPHTAVLGAIFVLVCDILGQLVIYPYQLSISLTVGVVGSVLFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=966259 MKY59_RS29165 WP_236413185.1 6452919..6453872(-) (ceuB) [Paenibacillus sp. FSL W8-0426]
ATGAAGTTGAGGTACATGCTGGTCATACTGCTGGTTTTGTCTTTCGCGTACATATTTATCGGCAATTCAGATATTGCGCC
TTGGGATTTATTTGACCTGAATGCTGTACAGCTGCAAGTGCTGCAGGTCAGTCGGATTCCGCGCCTGATCAGCATCCTTG
TCGCCGGGGTCAGCATGAGCGTCATCGGACTGATTATGCAGCAGCTCACACGGAACCGGTTCGTCTCGCCTACGACGGCG
GGAACGATGGATTCGGCACGGCTCGGCATTCTCGTCACGTTGATGTGGTTCCCGGGCGCTTCTCCTTTGCAAAAAATGTT
GGTGGCCTTTGTTTTTGCCTTGGCGGGCACCTTCATTTTCATGCGTATTCTGGAGCGGGTCAAATTCAAGGATACCGTCT
ACATTGCGCTTCTGGGCCTGATGTTCGGGAATATCATGAGCTCGATCACGACGTTTTTTGCTTATAAAAATGATCTCATC
CAGAATATCTCCTCTTGGCTGCAGGGAGATTTCTCGACCATCATGAAAGGCCGGTATGAGTTGATTTATATCAGCATCCC
GCTGCTGGTGATCGTCTACCTGTTTGCCAACCGGTTTACGCTGGCGGGCATGGGAGAAGATTTCGCCACCAATCTGGGGC
TTGCTTATCGGAGAGTTGTGAATATCGGACTCATTCTGGTTGCGATGGTGTCGGCTGTCGTGATCATCACGGTAGGAACG
ATTCCGTTTTTGGGGCTGGTCGTGCCGAACATCGTCACCCTGTACAAGGGGGACAATCTCCGCAGTACTTTGCCGCATAC
GGCGGTGCTTGGCGCCATTTTTGTGCTGGTCTGCGACATTCTGGGACAACTCGTCATTTATCCGTATCAGCTGTCCATCA
GTCTGACGGTAGGCGTGGTCGGCAGCGTATTGTTCCTGTATTTGCTGCTTCGAAGAAAGGCGTATGCATCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.899

99.685

0.517

Multiple sequence alignment