Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKZ14_RS22160 Genome accession   NZ_CP150202
Coordinates   4445049..4446425 (-) Length   458 a.a.
NCBI ID   WP_016992143.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL P2-0066     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4440049..4451425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ14_RS22140 (MKZ14_22140) ispF 4441109..4441585 (-) 477 WP_004233581.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MKZ14_RS22145 (MKZ14_22145) epsC 4441727..4442668 (-) 942 WP_004233580.1 serine O-acetyltransferase EpsC -
  MKZ14_RS22150 (MKZ14_22150) ispD 4442972..4443667 (-) 696 WP_036077773.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MKZ14_RS22155 (MKZ14_22155) - 4443679..4444764 (-) 1086 WP_312124192.1 PIN/TRAM domain-containing protein -
  MKZ14_RS22160 (MKZ14_22160) radA 4445049..4446425 (-) 1377 WP_016992143.1 DNA repair protein RadA Machinery gene
  MKZ14_RS22165 (MKZ14_22165) - 4446517..4448961 (-) 2445 WP_016992144.1 ATP-dependent Clp protease ATP-binding subunit -
  MKZ14_RS22170 (MKZ14_22170) - 4448951..4450060 (-) 1110 WP_036077777.1 protein arginine kinase -
  MKZ14_RS22175 (MKZ14_22175) - 4450057..4450599 (-) 543 WP_016992146.1 UvrB/UvrC motif-containing protein -
  MKZ14_RS22180 (MKZ14_22180) - 4450613..4451083 (-) 471 WP_004233573.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50171.01 Da        Isoelectric Point: 7.3825

>NTDB_id=966233 MKZ14_RS22160 WP_016992143.1 4445049..4446425(-) (radA) [Lysinibacillus sp. FSL P2-0066]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEMVAKGPRGAFQHSATVTQKAIPIIQVEATEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQ
TIDEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPASNIGGWEFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=966233 MKZ14_RS22160 WP_016992143.1 4445049..4446425(-) (radA) [Lysinibacillus sp. FSL P2-0066]
TTGGCAAAGAAAAAAACGAAATTTGTATGTTCAGGCTGTGGCTATGAATCTGCTAAATGGATGGGAAGATGTCCAGGGTG
TGGTGAATGGAATAAAATGGTCGAAGAAGTGGAGATGGTTGCTAAAGGTCCACGTGGAGCATTTCAACATTCTGCTACAG
TTACCCAAAAGGCAATCCCGATTATCCAGGTGGAAGCAACTGAGGAATCGCGTGTAGCAACAGAAATGGGCGAGCTCAAT
CGTGTATTAGGCGGCGGCATTGTACCTGGTTCTCTAGTATTAATTGGGGGCGATCCCGGAATAGGGAAATCAACATTACT
ATTACAGGTTTCCGCATTACTCTCAAATAAAGGGCATCGCGTACTTTATATTTCTGGAGAGGAATCCATTCGTCAAACGA
AATTACGAGCAGAGCGTTTAGGAGTGATTTCTCAAGAGCTTTACATATATTCCGAAACAAACCTAGAGTTTTTAAATCAA
ACCATTGATGAAGTCCAACCTAAATTTGTCATTGTGGATTCTATACAAACGGTCTTTCATCCAGAAGTAACAAGCGCCCC
AGGTAGTGTATCACAGGTTCGTGAATGTACAGCTGAGCTTATGCGAATCGCTAAAACTAAAGGTATTGCTATTTTTCTAG
TAGGGCATGTAACAAAAGAGGGGCAAATAGCTGGGCCACGTATTTTAGAACACATGGTTGATACTGTACTGTATTTTGAA
GGGGAAAGACATCATAATCATCGTATTTTACGAAGCCAAAAAAATCGCTTTGGTTCTACAAATGAAATTGCCATATTTGA
AATGCTTCAGGGTGGGTTAAAGGAAGTTCTAAACCCTTCTGAGTTATTTTTACAGGAGCGTTCACAAGGTGCGGCGGGGT
CAACTATTGTTGCATCAATGGAAGGGACAAGGCCTATCCTTGTTGAAATTCAATCCTTAGTTACACCTACAAGCTTTAAC
TATCCTAAACGTATGGCCACAGGTGTCGATCAAAACCGAGTACAATTGCTAATGGCTGTACTAGAAAAGCGTATGGGTCT
CATGCTACAAGCTCAGGATGCATATATTAAAGTTGCTGGTGGTGTCAAGCTGGATGAGCCAGCTATAGATTTAGCAGTGT
TGACAAGCATTGTATCTAGTTTTAAGGATCAGGCAGTGCGTGCAACGGATTGCTTTATTGGTGAGGTAGGACTGACAGGT
GAGGTCCGTCGGGTGTCACGTATAGAACAGCGAGTCATTGAAGCGGCGAAGCTTGGATTCAAAAGAGCTTTCATTCCAGC
TTCGAATATCGGTGGTTGGGAATTTCCACAGGGAATTGAAATTGTTGGTGTAGAAACGATAAAGGATGCTTTAAATGCAT
GCTTTAGAGAGCTATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.925

99.127

0.703
  radA Streptococcus pneumoniae Rx1

62.281

99.563

0.62
  radA Streptococcus pneumoniae D39

62.281

99.563

0.62
  radA Streptococcus pneumoniae R6

62.281

99.563

0.62
  radA Streptococcus pneumoniae TIGR4

62.281

99.563

0.62
  radA Streptococcus mitis NCTC 12261

62.281

99.563

0.62
  radA Streptococcus mitis SK321

62.281

99.563

0.62

Multiple sequence alignment