Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NSQ79_RS09665 Genome accession   NZ_CP150200
Coordinates   2079816..2080526 (+) Length   236 a.a.
NCBI ID   WP_049527744.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W7-1342     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2074816..2085526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ79_RS09655 (NSQ79_09655) treC 2076000..2077625 (-) 1626 WP_002887038.1 alpha,alpha-phosphotrehalase -
  NSQ79_RS09660 (NSQ79_09660) treP 2077680..2079659 (-) 1980 WP_049527746.1 PTS system trehalose-specific EIIBC component -
  NSQ79_RS09665 (NSQ79_09665) treR 2079816..2080526 (+) 711 WP_049527744.1 trehalose operon repressor Regulator
  NSQ79_RS09670 (NSQ79_09670) - 2080580..2081140 (-) 561 WP_049527743.1 TIGR01440 family protein -
  NSQ79_RS09675 (NSQ79_09675) - 2081156..2081494 (-) 339 WP_014635137.1 hypothetical protein -
  NSQ79_RS09680 (NSQ79_09680) - 2081527..2081883 (-) 357 WP_049527740.1 hypothetical protein -
  NSQ79_RS09685 (NSQ79_09685) - 2082794..2082988 (+) 195 WP_339313606.1 hypothetical protein -
  NSQ79_RS09690 (NSQ79_09690) - 2082934..2083236 (+) 303 WP_339313608.1 hypothetical protein -
  NSQ79_RS09695 (NSQ79_09695) - 2083269..2084006 (-) 738 WP_339313610.1 hypothetical protein -
  NSQ79_RS09700 (NSQ79_09700) - 2084011..2084805 (-) 795 WP_339313612.1 SinI family restriction endonuclease -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27311.94 Da        Isoelectric Point: 6.6089

>NTDB_id=966133 NSQ79_RS09665 WP_049527744.1 2079816..2080526(+) (treR) [Streptococcus sp. FSL W7-1342]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSKLSERTGFSNSQQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIF
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=966133 NSQ79_RS09665 WP_049527744.1 2079816..2080526(+) (treR) [Streptococcus sp. FSL W7-1342]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAACTGGTTCAATCTTATCAGGTTAGTCGAGACACTATACGAAAGGCGTTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGCTCCCAGGTTATTAACCAAGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAGGAGCTAATCGAACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATTGTTGATTC
AAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCAACAGGTTTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGATGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTTC
GACTACATAGAGAATCAACTCAACCTTAGCATCTCCCACGCCTTTAAAGAAATCACTATCGATAACGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTCGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCATAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGCCATCATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602

Multiple sequence alignment