Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   NSQ79_RS07140 Genome accession   NZ_CP150200
Coordinates   1562497..1564767 (+) Length   756 a.a.
NCBI ID   WP_037620401.1    Uniprot ID   A0A1V0H662
Organism   Streptococcus sp. FSL W7-1342     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 1557497..1569767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ79_RS07115 (NSQ79_07115) - 1558599..1559075 (-) 477 WP_037599232.1 ferrous iron transport protein A -
  NSQ79_RS07120 (NSQ79_07120) - 1559247..1559981 (-) 735 WP_013990918.1 amino acid ABC transporter ATP-binding protein -
  NSQ79_RS07125 (NSQ79_07125) - 1559981..1560661 (-) 681 WP_002886081.1 amino acid ABC transporter permease -
  NSQ79_RS07130 (NSQ79_07130) - 1560975..1561205 (-) 231 WP_002885970.1 DUF1797 family protein -
  NSQ79_RS07135 (NSQ79_07135) argF 1561274..1562254 (-) 981 WP_049528950.1 ornithine carbamoyltransferase -
  NSQ79_RS07140 (NSQ79_07140) clpE 1562497..1564767 (+) 2271 WP_037620401.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  NSQ79_RS07145 (NSQ79_07145) - 1564910..1565368 (+) 459 WP_049528946.1 NUDIX hydrolase -
  NSQ79_RS07150 (NSQ79_07150) - 1565378..1565680 (+) 303 WP_002885967.1 DUF1827 family protein -
  NSQ79_RS07155 (NSQ79_07155) - 1565726..1566688 (-) 963 WP_049528942.1 Gfo/Idh/MocA family oxidoreductase -
  NSQ79_RS07160 (NSQ79_07160) - 1566773..1568008 (-) 1236 WP_164332194.1 aminoacyltransferase -
  NSQ79_RS07165 (NSQ79_07165) - 1567986..1568669 (-) 684 WP_049528939.1 VTT domain-containing protein -
  NSQ79_RS07170 (NSQ79_07170) - 1568752..1569372 (-) 621 WP_049528931.1 DUF3862 domain-containing protein -

Sequence


Protein


Download         Length: 756 a.a.        Molecular weight: 83987.07 Da        Isoelectric Point: 5.0564

>NTDB_id=966111 NSQ79_RS07140 WP_037620401.1 1562497..1564767(+) (clpE) [Streptococcus sp. FSL W7-1342]
MLCQNCNLNEASIHLYTNVNGNQQQVDLCQNCYKIMKSDPENPLNQFNQTGGSNFFDDFFSDLNNFRSSNGDLPNTPPTQ
EGGNRGNGGNTQGPGRPGGPRQQAPQQPQGLLEEFGINITDIARRGDIDPVIGRDEEIIRVIEILNRRTKNNPVLIGEPG
VGKTAVVEGLAQKIVDGSVPQKLQGKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRQRQDVILFIDEIHEIVGAGNAG
DGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPTVEETITILRGIQPKYQDYHHVKYTDEAI
TAAAELSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKDIDKRLIEAENLKAQATRDEDFEKAAYFRDQIAKYKEMQ
KQTIKDQDMPVITEKHIEAIVEQKTNIPVGDLKEKEQSQLLSLADDLKSHVIGQDAAVDKIAKAIRRNRVGLGAPNRPIG
SFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHAVAKLVGAPPGYVGYDEAGQLTEKVRRNPYSLILLDEV
EKAHPDVLHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKVEASVGFGAARENRTNSVLNQLGDFFSPEFMNRFD
GIIEFSALSKENLLTIVDLMLDNVNQRLANNGIHLSVTEKVKEKLVDLGYDPKMGARPLRRTIQDHIEDAITDFYLENPN
EKDLKAVMTSKGHITIKSAKKAEKTAQKAETAKETD

Nucleotide


Download         Length: 2271 bp        

>NTDB_id=966111 NSQ79_RS07140 WP_037620401.1 1562497..1564767(+) (clpE) [Streptococcus sp. FSL W7-1342]
ATGCTCTGTCAAAACTGTAACCTTAATGAAGCTAGTATTCATTTGTATACCAATGTAAATGGTAATCAGCAACAAGTTGA
CCTCTGTCAAAATTGTTATAAAATCATGAAATCTGACCCAGAGAACCCACTCAATCAATTCAATCAAACAGGAGGTTCCA
ACTTCTTCGACGATTTCTTCAGCGACCTAAATAACTTCCGTTCTTCTAACGGCGATCTGCCCAATACACCTCCAACACAA
GAAGGTGGTAACCGAGGAAATGGCGGCAATACACAGGGGCCAGGCCGTCCAGGAGGACCACGCCAACAAGCTCCTCAACA
GCCCCAAGGTCTTCTCGAAGAGTTCGGCATTAACATCACTGACATCGCTCGTCGTGGAGACATTGATCCTGTTATTGGTC
GTGACGAGGAAATCATTCGTGTCATCGAAATTCTTAACCGCCGTACCAAGAACAACCCCGTCCTCATCGGTGAACCCGGT
GTCGGTAAGACTGCTGTTGTTGAAGGCCTAGCTCAAAAAATCGTTGACGGTAGCGTGCCACAAAAACTCCAAGGCAAACA
AGTCATCCGTCTTGATGTGGTCAGCCTGGTTCAAGGGACTGGTATTCGTGGCCAATTTGAAGAACGCATGCAAAAACTCA
TGGAAGAAATTCGTCAACGTCAGGATGTTATCCTATTTATTGATGAAATCCATGAAATCGTAGGAGCTGGTAATGCTGGT
GATGGCAATATGGATGCTGGAAACATCCTAAAACCCGCCCTTGCTCGTGGAGAACTTCAACTGGTCGGAGCAACTACACT
CAACGAATACCGCATCATCGAAAAAGATGCTGCCCTAGAGCGTCGTATGCAACCAGTTAAGGTTGACGAACCAACGGTTG
AGGAAACCATCACTATTTTGCGTGGTATTCAGCCTAAATATCAAGACTACCACCACGTCAAATATACAGACGAAGCTATT
ACTGCAGCTGCAGAATTGTCCAACCGCTACATTCAAGACCGTTTCTTACCAGACAAGGCCATCGACCTTCTTGATGAAGC
AGGTTCTAAGATGAACTTGACCCTCAATTTTGTTGATCCTAAAGATATCGACAAACGTTTGATTGAGGCTGAAAACCTCA
AGGCTCAAGCTACTCGTGACGAAGACTTTGAAAAAGCTGCCTATTTCCGTGATCAAATTGCCAAATACAAGGAAATGCAA
AAACAAACCATCAAAGACCAAGATATGCCTGTCATCACAGAAAAACATATCGAAGCCATTGTGGAACAAAAAACCAATAT
TCCTGTCGGTGATTTGAAAGAAAAAGAACAATCACAACTTCTTAGTCTTGCTGATGATCTTAAATCACATGTTATTGGAC
AAGATGCTGCAGTTGATAAGATTGCCAAAGCTATCCGCCGTAATCGTGTTGGATTGGGTGCTCCAAACCGCCCAATTGGT
AGCTTCCTCTTCGTAGGTCCTACAGGAGTCGGTAAAACTGAGCTCTCTAAACAATTGGCTATTGAACTCTTTGGTTCAGC
TGACAGTATGATTCGTTTCGATATGTCAGAATACATGGAAAAACACGCCGTTGCCAAATTGGTCGGTGCCCCTCCAGGAT
ATGTCGGTTACGACGAAGCTGGTCAGTTAACTGAAAAAGTCCGCCGTAATCCATATTCACTCATTCTTCTGGATGAGGTT
GAAAAAGCCCACCCAGACGTTCTTCACATGTTCCTCCAAGTTCTTGACGACGGTCGCTTGACTGATGGTCAAGGGCGAAC
TGTAAGTTTCAAGGATACCATCATCATCATGACTTCAAATGCTGGTACAGGTAAAGTTGAAGCTAGCGTTGGGTTTGGAG
CTGCCCGTGAAAATCGTACCAATTCTGTGCTTAACCAGCTTGGAGATTTCTTCAGCCCTGAATTCATGAACCGATTTGAT
GGTATTATCGAATTCTCTGCCCTTAGCAAGGAGAATCTCCTTACTATCGTTGACCTCATGCTTGATAATGTCAACCAACG
CTTGGCTAATAACGGTATCCACCTCAGTGTAACTGAGAAAGTTAAGGAAAAATTGGTTGACCTTGGTTACGATCCTAAGA
TGGGGGCTCGACCACTACGTCGTACCATCCAGGACCATATTGAAGATGCTATTACTGACTTCTACCTTGAAAATCCAAAT
GAAAAAGATCTCAAGGCTGTCATGACTTCAAAAGGCCACATCACCATTAAGTCTGCTAAAAAAGCTGAAAAAACTGCTCA
GAAAGCTGAGACAGCAAAAGAAACTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1V0H662

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

85.582

100

0.856

  clpE Streptococcus pneumoniae Rx1

83.267

99.603

0.829

  clpE Streptococcus pneumoniae D39

83.267

99.603

0.829

  clpE Streptococcus pneumoniae R6

83.267

99.603

0.829

  clpE Streptococcus pneumoniae TIGR4

83.267

99.603

0.829

  clpC Lactococcus lactis subsp. cremoris KW2

77.424

99.603

0.771

  clpC Bacillus subtilis subsp. subtilis str. 168

51.852

85.714

0.444

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.189

86.772

0.401

  clpC Streptococcus pneumoniae Rx1

47.36

82.672

0.392

  clpC Streptococcus pneumoniae D39

47.36

82.672

0.392

  clpC Streptococcus pneumoniae TIGR4

47.2

82.672

0.39

  clpC Streptococcus thermophilus LMD-9

47.04

82.672

0.389

  clpC Streptococcus thermophilus LMG 18311

46.72

82.672

0.386

  clpC Streptococcus mutans UA159

46.486

82.804

0.385


Multiple sequence alignment