Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   NITER_RS01095 Genome accession   NZ_AP026671
Coordinates   206734..208536 (-) Length   600 a.a.
NCBI ID   WP_084276472.1    Uniprot ID   -
Organism   Nitratiruptor tergarcus DSM 16512     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 201734..213536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NITER_RS01080 - 201743..202120 (-) 378 WP_084276475.1 response regulator -
  NITER_RS01085 - 202117..205215 (-) 3099 WP_084276474.1 ATP-binding protein -
  NITER_RS01090 - 205226..206671 (-) 1446 WP_084276473.1 Hpt domain-containing protein -
  NITER_RS01095 uvrC 206734..208536 (-) 1803 WP_084276472.1 excinuclease ABC subunit UvrC Machinery gene
  NITER_RS01100 - 208511..208963 (-) 453 WP_143779654.1 hypothetical protein -
  NITER_RS01105 nadB 209053..210489 (+) 1437 WP_084276469.1 L-aspartate oxidase -
  NITER_RS01110 nhaD 210500..211801 (+) 1302 WP_084276468.1 sodium:proton antiporter NhaD -
  NITER_RS01115 guaA 211812..213362 (+) 1551 WP_084276467.1 glutamine-hydrolyzing GMP synthase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69275.53 Da        Isoelectric Point: 9.9960

>NTDB_id=96610 NITER_RS01095 WP_084276472.1 206734..208536(-) (uvrC) [Nitratiruptor tergarcus DSM 16512]
MQQLKEKIKKLPDQPGVYQYFDAQGRLLYIGKAKSLKKRVKSYFRFTPFAPAPNLSPRIYKMVNEIKNLEYIVVSSENDA
LILENSLIKQLKPKYNILLRDDKTYPYIYVDFAEDFPRLKITRKVLAGKKVKYFGPFPSAAKDIVDSIYEIFPLVQKESC
IKGKKACLFYQMQKCLAPCEGKISKEEYRKILDEAIAHIHNKKLLLQKLEQKMLALSAQLRFEEAAQIRDRIDKIRAIEF
QSEIDFAKLQDIDVYAIASDKTQAAIVRMFMREGKVVASSSNIVRIDEYKGFDKEEAYKRVLLEFYTTQTPLTASLIVVA
EDFEAREELENFLSQKFNKKITIVHPKRGEKRRLADIAQLNAKEILAKSKPKSDIEEQLQNLLDLNSKPYRIEVFDNSHI
SGSIPVGAMIVYENGAFDKKSYRHYNLHAQDEYAQMKELLTHRCESFAKNPPPDMWLIDGGETLRRLAQDIAQSFGVSID
VIAIAKEKIDAKAHRAKGKAKDLIYTQNGVLRLLPTDKRLQFLQKLRDEAHRFAITFHRKQRSKKAKELELLKISGIGEA
KIRKLLNYFGSFENIRLASEEELSDVLNKKDAKNIKKSLN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=96610 NITER_RS01095 WP_084276472.1 206734..208536(-) (uvrC) [Nitratiruptor tergarcus DSM 16512]
ATGCAGCAGCTCAAAGAGAAAATTAAAAAGCTCCCTGACCAACCAGGCGTCTATCAATATTTTGATGCGCAGGGAAGACT
GCTTTATATCGGCAAAGCTAAAAGCCTCAAAAAAAGGGTCAAAAGCTATTTTCGCTTCACCCCATTTGCACCAGCTCCAA
ACCTCTCACCTCGCATATATAAAATGGTAAATGAGATCAAAAATCTCGAATATATTGTTGTCTCTTCTGAAAATGATGCT
TTGATACTCGAAAACTCCCTTATTAAACAGCTCAAACCAAAATATAACATTCTCTTGCGGGATGATAAAACCTATCCCTA
TATTTATGTAGACTTTGCAGAAGATTTTCCAAGGCTAAAAATTACACGCAAAGTTCTTGCAGGCAAAAAGGTAAAATATT
TTGGTCCATTTCCTAGTGCAGCAAAAGATATTGTAGACTCTATTTATGAAATATTTCCCCTTGTGCAAAAAGAGTCCTGT
ATAAAAGGAAAAAAAGCTTGCCTCTTTTATCAGATGCAAAAATGCCTTGCACCGTGCGAGGGAAAAATTTCAAAAGAGGA
GTATAGAAAAATTCTCGATGAAGCGATTGCACATATCCACAATAAAAAACTGCTTTTGCAAAAACTTGAGCAAAAGATGC
TTGCACTCTCTGCGCAACTGCGCTTTGAAGAGGCTGCTCAGATAAGGGATCGCATAGATAAAATTCGCGCTATTGAGTTC
CAAAGTGAAATAGATTTTGCAAAACTCCAAGATATAGATGTTTACGCTATTGCTTCAGACAAAACCCAAGCTGCAATCGT
AAGAATGTTTATGCGCGAAGGAAAAGTAGTAGCTAGCAGCTCAAATATTGTGCGCATTGATGAGTATAAAGGTTTTGACA
AAGAAGAGGCTTATAAAAGAGTACTTTTAGAATTTTATACTACACAAACTCCGCTTACTGCTTCTTTGATAGTAGTTGCG
GAGGATTTTGAAGCAAGAGAGGAGTTAGAGAATTTTTTAAGTCAAAAATTTAACAAAAAAATAACTATAGTACACCCCAA
GAGAGGCGAAAAGCGAAGACTTGCAGATATCGCGCAACTCAATGCAAAAGAGATTCTTGCAAAAAGCAAACCAAAAAGCG
ATATTGAAGAACAACTCCAAAACCTTTTAGATCTTAATAGCAAACCCTACCGCATAGAGGTTTTTGACAACTCTCACATC
AGCGGCTCCATTCCAGTTGGAGCGATGATAGTCTATGAAAATGGAGCATTTGATAAAAAAAGTTACCGCCACTATAATCT
GCACGCGCAAGATGAATATGCACAGATGAAAGAACTCCTCACTCATAGATGTGAGAGTTTTGCAAAAAATCCTCCCCCAG
ATATGTGGCTCATTGATGGGGGTGAGACACTCAGAAGACTTGCACAAGATATTGCGCAAAGCTTCGGTGTATCTATCGAT
GTCATAGCAATTGCAAAAGAGAAGATAGATGCAAAAGCCCACAGAGCAAAAGGAAAAGCTAAAGATCTCATATATACACA
AAATGGCGTTCTTCGACTCCTTCCAACAGACAAAAGATTACAATTTTTACAAAAGTTACGGGATGAAGCACATAGATTTG
CCATTACTTTTCATCGCAAACAGCGCAGTAAAAAAGCTAAAGAGCTCGAACTTCTCAAAATCTCTGGTATAGGAGAAGCA
AAAATTCGCAAACTTCTTAACTATTTTGGAAGTTTTGAAAATATTCGCTTAGCCAGTGAAGAGGAGCTATCAGATGTCCT
TAACAAAAAAGATGCAAAAAATATCAAAAAAAGCCTCAATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix domain (HHH_5)

(550-599)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-535)

UvrB/uvrC motif (UVR)

(205-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

53.445

99.167

0.53

Multiple sequence alignment