Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NSQ78_RS16655 Genome accession   NZ_CP150199
Coordinates   3561406..3561807 (-) Length   133 a.a.
NCBI ID   WP_005418455.1    Uniprot ID   -
Organism   Stenotrophomonas sp. FSL W7-1447     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3556406..3566807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ78_RS16640 (NSQ78_16640) - 3558417..3560453 (-) 2037 WP_049468083.1 methyl-accepting chemotaxis protein -
  NSQ78_RS16645 (NSQ78_16645) - 3560495..3561025 (-) 531 WP_049468081.1 chemotaxis protein CheW -
  NSQ78_RS16650 (NSQ78_16650) - 3561025..3561387 (-) 363 WP_005410717.1 response regulator -
  NSQ78_RS16655 (NSQ78_16655) pilG 3561406..3561807 (-) 402 WP_005418455.1 twitching motility response regulator PilG Regulator
  NSQ78_RS16660 (NSQ78_16660) gshB 3562048..3562995 (+) 948 WP_064239040.1 glutathione synthase -
  NSQ78_RS16665 (NSQ78_16665) - 3562995..3563879 (+) 885 WP_053461113.1 energy transducer TonB -
  NSQ78_RS16670 (NSQ78_16670) tsaB 3564528..3565244 (-) 717 Protein_3266 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14657.98 Da        Isoelectric Point: 6.3483

>NTDB_id=966057 NSQ78_RS16655 WP_005418455.1 3561406..3561807(-) (pilG) [Stenotrophomonas sp. FSL W7-1447]
MTENTTAGGELAGLRVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKATPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLGAIRTYVNA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=966057 NSQ78_RS16655 WP_005418455.1 3561406..3561807(-) (pilG) [Stenotrophomonas sp. FSL W7-1447]
ATGACTGAAAACACGACTGCGGGCGGGGAACTCGCAGGACTCCGGGTGATGGTCATCGATGATTCGAAGACCATCCGCAG
GACTGCGGAAACGCTGCTCAAGCGCGAAGGCTGCGAGGTGGTCACCGCCACCGACGGCTTCGAAGCGCTTGCCAAGATCG
CAGACCAGCAACCGCAGATCATCTTCGTCGACATCATGATGCCGCGCCTGGATGGGTACCAGACCTGTGCGCTGATCAAG
GGCAACCAGCTGTTCAAGGCGACCCCGGTGATCATGCTGTCATCCAAGGATGGTCTGTTCGACAAGGCGCGGGGGCGCAT
CGTCGGCTCGGAGCAATACCTGACCAAGCCTTTCACGCGCGAAGAACTGCTGGGTGCCATCCGCACATACGTCAACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.38

90.977

0.677

Multiple sequence alignment