Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NST06_RS12335 Genome accession   NZ_CP150197
Coordinates   2357526..2358596 (-) Length   356 a.a.
NCBI ID   WP_025092972.1    Uniprot ID   A0A5C0WKU5
Organism   Bacillus sp. FSL P4-0322     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2352526..2363596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST06_RS12285 (NST06_12285) - 2352620..2353192 (-) 573 WP_024422971.1 signal peptidase I -
  NST06_RS12290 (NST06_12290) tapA 2353245..2353772 (-) 528 WP_326161475.1 amyloid fiber anchoring/assembly protein TapA -
  NST06_RS12295 (NST06_12295) - 2354072..2354350 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  NST06_RS12300 (NST06_12300) - 2354385..2354579 (-) 195 WP_149126478.1 YqzE family protein -
  NST06_RS12305 (NST06_12305) comGG 2354639..2355022 (-) 384 WP_073206276.1 competence type IV pilus minor pilin ComGG -
  NST06_RS12310 (NST06_12310) comGF 2355019..2355546 (-) 528 WP_335343444.1 competence type IV pilus minor pilin ComGF -
  NST06_RS12315 (NST06_12315) comGE 2355458..2355772 (-) 315 WP_149126477.1 competence type IV pilus minor pilin ComGE -
  NST06_RS12320 (NST06_12320) comGD 2355756..2356202 (-) 447 WP_149126476.1 competence type IV pilus minor pilin ComGD -
  NST06_RS12325 (NST06_12325) comGC 2356195..2356488 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  NST06_RS12330 (NST06_12330) comGB 2356505..2357545 (-) 1041 WP_103131948.1 competence type IV pilus assembly protein ComGB -
  NST06_RS12335 (NST06_12335) comGA 2357526..2358596 (-) 1071 WP_025092972.1 competence type IV pilus ATPase ComGA Machinery gene
  NST06_RS12340 (NST06_12340) - 2358777..2359652 (-) 876 WP_024422979.1 STAS domain-containing protein -
  NST06_RS12350 (NST06_12350) - 2359876..2360256 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NST06_RS12355 (NST06_12355) - 2360470..2360712 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  NST06_RS12360 (NST06_12360) - 2360760..2361398 (-) 639 WP_024422981.1 MBL fold metallo-hydrolase -
  NST06_RS12365 (NST06_12365) - 2361556..2361729 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  NST06_RS12370 (NST06_12370) - 2361954..2362268 (-) 315 WP_024427984.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40412.86 Da        Isoelectric Point: 9.5360

>NTDB_id=965982 NST06_RS12335 WP_025092972.1 2357526..2358596(-) (comGA) [Bacillus sp. FSL P4-0322]
MYGIEYLRQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRKGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDVIVLGEIRDAETARTAIRAALTGHLVLSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGERCQLYCKLNRPIRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=965982 NST06_RS12335 WP_025092972.1 2357526..2358596(-) (comGA) [Bacillus sp. FSL P4-0322]
TTGTATGGGATTGAATATTTAAGGCAAGAGCTGCTAGAAGAAGCATGCCGCATGAGGGCTTCTGATGTGCATATTGTGCC
AAAAGAAAAGGAAGCTTCGGTGTCATTTCGTGTTGACTCAGATTTAATCCAGCAGCGAACGATTGATAAAAAAAGCGGAG
AGAGGCTTATTGCACATTTTAAATTTTTATCTTCTATGGATATCGGGGAAAAAAGGAGACCGCAAAATGGCTCACTAGCT
GTGATGCTAAGAAAAGGACAAGTGTTTATTCGGATGTCTACTTTGCCGACAGTAAATGATGAGAGCTTAGTGATTAGAAT
ATTGCCGCAGGATCATGTTCCGAAAATAAAACATCTATCATTATTTCCGAAAGCCTCAGCCAGATTATTATCCTTTTTAA
ACCACTCGCATGGACTCATTTTATTTACTGGGCCAACCAATTCGGGGAAAACAACAACCCTCTATTCACTGATCCAGTTT
GCAAAAAAGAATTTCAACCGAAATATTATTACACTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTATTACAGGTTCA
AGTAAATGAAAAAGCCGGCATCACATATGCCGCAGGATTACGCGCTATTTTAAGACATGATCCAGATGTGATTGTGCTAG
GAGAAATAAGAGATGCTGAAACGGCTAGAACGGCGATTAGAGCAGCACTGACAGGCCATTTAGTATTGAGTACGCTCCAT
GCAAAAAACGCAAAAGGAGCCCTTTATCGTATGCTTGAATTTGGTGTCACGATGAATGAACTTGAGCAAACGATGGTTGC
GATTGCTGCGCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAAAGATGTCAGCTTTACTGTAAATTAAATCGAC
CGATCAGACGAACAAATGTATTTGAACTGCTGTTCGGAAAAGAGCTTGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACACTGCAAAGATTAATTCGTAAAGGAGTGGCACTCGGCTATTTATCAAAAAACACTTACCA
TCGCTGGGTTTATGAAGAAGCGAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WKU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.689

99.438

0.643

Multiple sequence alignment