Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NST06_RS12275 | Genome accession | NZ_CP150197 |
| Coordinates | 2351362..2351697 (+) | Length | 111 a.a. |
| NCBI ID | WP_024422969.1 | Uniprot ID | - |
| Organism | Bacillus sp. FSL P4-0322 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2346362..2356697
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NST06_RS12255 (NST06_12255) | gcvT | 2346841..2347938 (-) | 1098 | WP_339239978.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NST06_RS12260 (NST06_12260) | - | 2348499..2350169 (+) | 1671 | WP_024427994.1 | SNF2-related protein | - |
| NST06_RS12265 (NST06_12265) | - | 2350184..2350981 (+) | 798 | WP_326161478.1 | YqhG family protein | - |
| NST06_RS12270 (NST06_12270) | - | 2351164..2351328 (+) | 165 | WP_073206269.1 | anti-repressor SinI family protein | - |
| NST06_RS12275 (NST06_12275) | sinR | 2351362..2351697 (+) | 336 | WP_024422969.1 | transcriptional regulator SinR | Regulator |
| NST06_RS12280 (NST06_12280) | - | 2351765..2352565 (-) | 801 | WP_326161477.1 | TasA family protein | - |
| NST06_RS12285 (NST06_12285) | - | 2352620..2353192 (-) | 573 | WP_024422971.1 | signal peptidase I | - |
| NST06_RS12290 (NST06_12290) | tapA | 2353245..2353772 (-) | 528 | WP_326161475.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NST06_RS12295 (NST06_12295) | - | 2354072..2354350 (+) | 279 | WP_171464609.1 | DUF3889 domain-containing protein | - |
| NST06_RS12300 (NST06_12300) | - | 2354385..2354579 (-) | 195 | WP_149126478.1 | YqzE family protein | - |
| NST06_RS12305 (NST06_12305) | comGG | 2354639..2355022 (-) | 384 | WP_073206276.1 | competence type IV pilus minor pilin ComGG | - |
| NST06_RS12310 (NST06_12310) | comGF | 2355019..2355546 (-) | 528 | WP_335343444.1 | competence type IV pilus minor pilin ComGF | - |
| NST06_RS12315 (NST06_12315) | comGE | 2355458..2355772 (-) | 315 | WP_149126477.1 | competence type IV pilus minor pilin ComGE | - |
| NST06_RS12320 (NST06_12320) | comGD | 2355756..2356202 (-) | 447 | WP_149126476.1 | competence type IV pilus minor pilin ComGD | - |
| NST06_RS12325 (NST06_12325) | comGC | 2356195..2356488 (-) | 294 | WP_024422977.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12978.56 Da Isoelectric Point: 5.0026
>NTDB_id=965980 NST06_RS12275 WP_024422969.1 2351362..2351697(+) (sinR) [Bacillus sp. FSL P4-0322]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=965980 NST06_RS12275 WP_024422969.1 2351362..2351697(+) (sinR) [Bacillus sp. FSL P4-0322]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |