Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NST06_RS08700 Genome accession   NZ_CP150197
Coordinates   1717457..1717837 (+) Length   126 a.a.
NCBI ID   WP_065214465.1    Uniprot ID   -
Organism   Bacillus sp. FSL P4-0322     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1712457..1722837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST06_RS08690 (NST06_08690) - 1712954..1716097 (+) 3144 WP_339241477.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  NST06_RS08695 (NST06_08695) - 1716291..1717199 (+) 909 WP_024425124.1 trypsin-like serine protease -
  NST06_RS08700 (NST06_08700) nucA/comI 1717457..1717837 (+) 381 WP_065214465.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NST06_RS08705 (NST06_08705) - 1717983..1718831 (+) 849 WP_024427077.1 STAS domain-containing protein -
  NST06_RS08710 (NST06_08710) - 1718864..1719406 (-) 543 WP_024425127.1 IseA DL-endopeptidase inhibitor family protein -
  NST06_RS08715 (NST06_08715) - 1719703..1720149 (+) 447 WP_149126619.1 hypothetical protein -
  NST06_RS08720 (NST06_08720) lexA 1720195..1720815 (-) 621 WP_024425129.1 transcriptional repressor LexA -
  NST06_RS08725 (NST06_08725) yneA 1720974..1721285 (+) 312 WP_024425130.1 cell division suppressor protein YneA -
  NST06_RS08730 (NST06_08730) - 1721303..1721950 (+) 648 WP_025093247.1 recombinase family protein -
  NST06_RS08735 (NST06_08735) - 1722020..1722250 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13833.49 Da        Isoelectric Point: 7.9051

>NTDB_id=965976 NST06_RS08700 WP_065214465.1 1717457..1717837(+) (nucA/comI) [Bacillus sp. FSL P4-0322]
MGTLFGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISEFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=965976 NST06_RS08700 WP_065214465.1 1717457..1717837(+) (nucA/comI) [Bacillus sp. FSL P4-0322]
ATGGGCACGTTGTTTGGCGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACAAAACCTGGCTTTGACCGGGATGAATGGCCA
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTTCAATATGTCAGTCCATCTGATAATAGGGGGGCAGGCTCATG
GGTCGGGCATCAAATCAGCGAGTTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment