Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NST06_RS01925 Genome accession   NZ_CP150197
Coordinates   362277..362705 (-) Length   142 a.a.
NCBI ID   WP_056765081.1    Uniprot ID   -
Organism   Bacillus sp. FSL P4-0322     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 357277..367705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST06_RS01895 (NST06_01895) - 357440..357769 (+) 330 WP_024424311.1 YckD family protein -
  NST06_RS01900 (NST06_01900) - 357813..358577 (-) 765 WP_339240776.1 MBL fold metallo-hydrolase -
  NST06_RS01905 (NST06_01905) - 358693..359109 (+) 417 WP_025092811.1 Lrp/AsnC family transcriptional regulator -
  NST06_RS01910 (NST06_01910) - 359138..359944 (+) 807 WP_025092812.1 AAC(3) family N-acetyltransferase -
  NST06_RS01915 (NST06_01915) - 359946..360332 (-) 387 WP_056765076.1 competence protein ComJ -
  NST06_RS01920 (NST06_01920) - 360452..362149 (-) 1698 WP_056765079.1 methyl-accepting chemotaxis protein -
  NST06_RS01925 (NST06_01925) nucA/comI 362277..362705 (-) 429 WP_056765081.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NST06_RS01930 (NST06_01930) - 363073..365142 (+) 2070 WP_024427271.1 hydantoinase/oxoprolinase family protein -
  NST06_RS01935 (NST06_01935) - 365132..367120 (+) 1989 WP_056765084.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15985.99 Da        Isoelectric Point: 6.2215

>NTDB_id=965951 NST06_RS01925 WP_056765081.1 362277..362705(-) (nucA/comI) [Bacillus sp. FSL P4-0322]
MKLLKMILLLLLIVIGVATGYIQLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDRS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVRPSDNRGAGSWISHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=965951 NST06_RS01925 WP_056765081.1 362277..362705(-) (nucA/comI) [Bacillus sp. FSL P4-0322]
ATGAAACTTCTTAAAATGATTCTCTTGCTTTTATTGATTGTTATTGGTGTAGCAACAGGCTATATCCAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACGATTCATTTTCCATCAGACCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCATCCATTTGTACAATTGACCGTAAACATAGTGATGAGCAGAGGGATCGATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGTGACGAATGGCCAATGGCAATGTGCAAAGAAGGAGGCACAGGAGC
TTCTGTCAAATATGTACGCCCTTCTGATAATAGAGGCGCAGGCTCGTGGATAAGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATTCAATTTATCATTGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.789

80.282

0.528

Multiple sequence alignment