Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NSQ10_RS10390 Genome accession   NZ_CP150196
Coordinates   2053945..2054580 (+) Length   211 a.a.
NCBI ID   WP_058837936.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0432     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2048945..2059580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ10_RS10350 (NSQ10_10350) - 2049103..2050221 (+) 1119 WP_235354763.1 NADH-dependent flavin oxidoreductase -
  NSQ10_RS10355 (NSQ10_10355) - 2050275..2050781 (-) 507 WP_039183169.1 PTS glucose transporter subunit IIA -
  NSQ10_RS10360 (NSQ10_10360) - 2050951..2051370 (+) 420 WP_039179459.1 Hsp20/alpha crystallin family protein -
  NSQ10_RS10365 (NSQ10_10365) - 2051391..2051843 (-) 453 WP_339207785.1 YppG family protein -
  NSQ10_RS10370 (NSQ10_10370) - 2051952..2052332 (-) 381 WP_228280239.1 YppE family protein -
  NSQ10_RS10375 (NSQ10_10375) - 2052382..2052615 (-) 234 WP_224928722.1 DUF5446 family protein -
  NSQ10_RS10380 (NSQ10_10380) sspM 2052813..2052917 (+) 105 WP_039179471.1 acid-soluble spore protein SspM -
  NSQ10_RS10385 (NSQ10_10385) - 2052942..2053898 (-) 957 WP_339207788.1 DUF2515 domain-containing protein -
  NSQ10_RS10390 (NSQ10_10390) recU 2053945..2054580 (+) 636 WP_058837936.1 Holliday junction resolvase RecU Machinery gene
  NSQ10_RS10395 (NSQ10_10395) - 2054600..2057305 (+) 2706 WP_339207790.1 PBP1A family penicillin-binding protein -
  NSQ10_RS10400 (NSQ10_10400) - 2057342..2057851 (-) 510 WP_039179482.1 YpoC family protein -
  NSQ10_RS10405 (NSQ10_10405) nth 2057848..2058510 (-) 663 WP_339207792.1 endonuclease III -
  NSQ10_RS10410 (NSQ10_10410) - 2058528..2059232 (-) 705 WP_039179485.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.67 Da        Isoelectric Point: 9.7504

>NTDB_id=965917 NSQ10_RS10390 WP_058837936.1 2053945..2054580(+) (recU) [Bacillus sp. FSL R5-0432]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
QNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=965917 NSQ10_RS10390 WP_058837936.1 2053945..2054580(+) (recU) [Bacillus sp. FSL R5-0432]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTATAACGGGGTGTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGCATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAG
CAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment