Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ10_RS09015 Genome accession   NZ_CP150196
Coordinates   1782339..1782719 (+) Length   126 a.a.
NCBI ID   WP_228280000.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0432     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1777339..1787719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ10_RS09005 (NSQ10_09005) - 1777833..1780976 (+) 3144 WP_339209578.1 cytochrome P450 -
  NSQ10_RS09010 (NSQ10_09010) - 1781171..1782079 (+) 909 WP_039178896.1 trypsin-like serine protease -
  NSQ10_RS09015 (NSQ10_09015) nucA/comI 1782339..1782719 (+) 381 WP_228280000.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSQ10_RS09020 (NSQ10_09020) - 1782867..1783715 (+) 849 WP_039178899.1 STAS domain-containing protein -
  NSQ10_RS09025 (NSQ10_09025) - 1783748..1784290 (-) 543 WP_039178902.1 IseA DL-endopeptidase inhibitor family protein -
  NSQ10_RS09030 (NSQ10_09030) - 1784587..1785033 (+) 447 WP_039178904.1 hypothetical protein -
  NSQ10_RS09035 (NSQ10_09035) lexA 1785079..1785699 (-) 621 WP_024425129.1 transcriptional repressor LexA -
  NSQ10_RS09040 (NSQ10_09040) yneA 1785859..1786170 (+) 312 WP_034283425.1 cell division suppressor protein YneA -
  NSQ10_RS09045 (NSQ10_09045) - 1786188..1786835 (+) 648 WP_339209582.1 recombinase family protein -
  NSQ10_RS09050 (NSQ10_09050) - 1786905..1787135 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13757.50 Da        Isoelectric Point: 8.5068

>NTDB_id=965916 NSQ10_RS09015 WP_228280000.1 1782339..1782719(+) (nucA/comI) [Bacillus sp. FSL R5-0432]
MGMLLGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=965916 NSQ10_RS09015 WP_228280000.1 1782339..1782719(+) (nucA/comI) [Bacillus sp. FSL R5-0432]
ATGGGCATGTTGTTAGGTGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACA
GGAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGGATACCGACAAAACCTGGATTTGACCGGGATGAATGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTTCAATATGTCAGTCCATCTGATAATAGGGGAGCAGGCTCATG
GGTCGGGCACCAAATCAGCGGATTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.349

100

0.563

Multiple sequence alignment