Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSQ10_RS08105 Genome accession   NZ_CP150196
Coordinates   1594355..1595257 (+) Length   300 a.a.
NCBI ID   WP_039178503.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0432     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1589355..1600257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ10_RS08085 (NSQ10_08085) - 1590018..1591757 (+) 1740 WP_039178501.1 hypothetical protein -
  NSQ10_RS08090 (NSQ10_08090) - 1591754..1592029 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  NSQ10_RS08095 (NSQ10_08095) sucC 1592206..1593366 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  NSQ10_RS08100 (NSQ10_08100) sucD 1593389..1594291 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NSQ10_RS08105 (NSQ10_08105) dprA 1594355..1595257 (+) 903 WP_039178503.1 DNA-processing protein DprA Machinery gene
  NSQ10_RS08110 (NSQ10_08110) topA 1595451..1597526 (+) 2076 WP_039178505.1 type I DNA topoisomerase -
  NSQ10_RS08115 (NSQ10_08115) trmFO 1597597..1598901 (+) 1305 WP_039178506.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ10_RS08120 (NSQ10_08120) xerC 1598964..1599881 (+) 918 WP_039178508.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34155.58 Da        Isoelectric Point: 9.1161

>NTDB_id=965912 NSQ10_RS08105 WP_039178503.1 1594355..1595257(+) (dprA) [Bacillus sp. FSL R5-0432]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRLPSSYGEACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTRGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=965912 NSQ10_RS08105 WP_039178503.1 1594355..1595257(+) (dprA) [Bacillus sp. FSL R5-0432]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTACTTACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCAAGCACTCTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGACTTCCATCATCTTATGGAGAAGCATGTGTGA
AAAAAATTGTTGGTGAGCTTGTCAAAGAAGAGTGGATGATTGTTAGTGGGCTAGCTAAAGGAATCGATGGACTGGCACAT
AAAGAGTGCATCAGGAAAAAAGGGAAAACGATTGGCATTATAGCCGGTGGCTTTCAGCATTTATACCCAAAAGAGCATGC
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCGTTGACGAGAGGAACCATTGTCATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAAGTATTTGCGGTTGCCGGTTCCATCTTTGATCCTAATTCCACAGG
ACCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCTACAAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Legionella pneumophila strain ERS1305867

38.033

100

0.387

Multiple sequence alignment