Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   NSQ10_RS06850 Genome accession   NZ_CP150196
Coordinates   1350598..1352700 (-) Length   700 a.a.
NCBI ID   WP_247544247.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0432     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1345598..1357700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ10_RS06825 (NSQ10_06825) - 1345978..1346220 (+) 243 WP_039178071.1 aspartyl-phosphate phosphatase Spo0E family protein -
  NSQ10_RS06830 (NSQ10_06830) - 1346267..1347772 (-) 1506 WP_212042849.1 ATP-binding protein -
  NSQ10_RS06835 (NSQ10_06835) - 1347977..1348432 (+) 456 WP_034281539.1 MarR family transcriptional regulator -
  NSQ10_RS06840 (NSQ10_06840) motB 1348661..1349431 (-) 771 WP_039178076.1 flagellar motor protein MotB -
  NSQ10_RS06845 (NSQ10_06845) motA 1349424..1350218 (-) 795 WP_024424680.1 flagellar motor stator protein MotA -
  NSQ10_RS06850 (NSQ10_06850) clpC 1350598..1352700 (-) 2103 WP_247544247.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  NSQ10_RS06855 (NSQ10_06855) - 1352945..1353988 (+) 1044 WP_151284238.1 hypothetical protein -
  NSQ10_RS06860 (NSQ10_06860) queC 1354264..1354920 (+) 657 WP_126681749.1 7-cyano-7-deazaguanine synthase QueC -
  NSQ10_RS06865 (NSQ10_06865) queD 1354921..1355361 (+) 441 WP_047202222.1 6-carboxytetrahydropterin synthase QueD -
  NSQ10_RS06870 (NSQ10_06870) queE 1355354..1356085 (+) 732 WP_047202223.1 7-carboxy-7-deazaguanine synthase QueE -
  NSQ10_RS06875 (NSQ10_06875) queF 1356101..1356598 (+) 498 WP_039178083.1 preQ(1) synthase -
  NSQ10_RS06880 (NSQ10_06880) - 1357053..1357271 (+) 219 WP_268464757.1 hypothetical protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77942.53 Da        Isoelectric Point: 5.0302

>NTDB_id=965908 NSQ10_RS06850 WP_247544247.1 1350598..1352700(-) (clpC) [Bacillus sp. FSL R5-0432]
MRCQHCQVNEATIRLNMQVNSSRNQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQQAGHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTPDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTDKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSADKTVKVGFQSDQDEAIEEQSLIDSLSSYFKPEFLNRFDSIIQFDSLDREDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=965908 NSQ10_RS06850 WP_247544247.1 1350598..1352700(-) (clpC) [Bacillus sp. FSL R5-0432]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAACCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTCAGCTTTTTGGAGGAAGTTCAT
TCTTCTCTCAACAGGCAGGTCATGCCCCAAACATGGAGCAGCCAAAACAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGCTTAATTGATCCAGTCATTGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCAC
TTAAAATTGCGAGCGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTTTCTTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAACTTCAGAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCACCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGCGAACTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGACGCTTCCAGCCCGTTATCGTGGATGAGCCAACACCAGATGAAGCGATCGACATCTTAAAAGGTATTCAAGATAA
GTACGAGGCCTATCATGGTGTCACCTATTCAGATGAAGCCATCAAAGCGTGCGTTCAATTATCTTCCCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATCTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCTGCAAGT
GAAGATGAACTGACAAACCGACTTGCGCAAATTGCCGCAGAAAAACAGGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGACAAAGAGCATATCGTCACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGCAAACTACAAGCAGACGAACAAACCAAAATG
AAAGAAATTGATGTCCGTCTAAAAGCACGAGTAATTGGGCAGGAGCATGCGGTTGATAAAGTGGCGAAAGCCGTGAAAAG
AAGCAGAGCTGGATTAAAATCGAAACATAGACCGACAGGCTCCTTCCTTTTCGTAGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGCTGGCTGAAGAATTATTCGGCTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACACGATGAAGCTGGCCAGCTGACTGAAAAAGT
GCGCAGAAAACCTTACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCAGATGTACAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGTTTAACAGACAGCCAAGGTAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGCGCAGATAAAACGGTCAAGGTCGGCTTCCAGTCTGATCAGGACGAAGCGATTGAGGAACAATCACTCATTGA
TTCGCTCAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGATAGCATCATTCAATTTGATTCACTAGACAGAGAGG
ACTTAGTGAAGATTGTTGATCTTCTGCTTAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACAGTCCATGTCACA
AATGAAGCGAAAGAAAAAATCGCAGAGCTTGGATATCACCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATCCAAGA
GCATGTTGAAGATCAAATGACAGAGATCCTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-687)

AAA lid domain (AAA_lid_9)

(254-353)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.64

100

0.597
  clpE Streptococcus mutans UA159

56.199

100

0.596
  clpE Streptococcus pneumoniae Rx1

55.387

100

0.573
  clpE Streptococcus pneumoniae D39

55.387

100

0.573
  clpE Streptococcus pneumoniae R6

55.387

100

0.573
  clpE Streptococcus pneumoniae TIGR4

55.387

100

0.573
  clpC Bacillus subtilis subsp. subtilis str. 168

54.03

95.714

0.517
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.385

92.857

0.44
  clpC Streptococcus thermophilus LMG 18311

45.975

92.286

0.424
  clpC Streptococcus thermophilus LMD-9

45.891

92.143

0.423
  clpC Streptococcus mutans UA159

44.325

93.143

0.413
  clpC Streptococcus pneumoniae TIGR4

43.981

92.571

0.407
  clpC Streptococcus pneumoniae Rx1

44.168

91.857

0.406
  clpC Streptococcus pneumoniae D39

44.168

91.857

0.406

Multiple sequence alignment