Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ10_RS01940 Genome accession   NZ_CP150196
Coordinates   362353..362781 (-) Length   142 a.a.
NCBI ID   WP_039176411.1    Uniprot ID   A0AAX0Z579
Organism   Bacillus sp. FSL R5-0432     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 357353..367781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ10_RS01910 (NSQ10_01910) - 357517..357846 (+) 330 WP_039182972.1 YckD family protein -
  NSQ10_RS01915 (NSQ10_01915) - 357888..358652 (-) 765 WP_039176398.1 MBL fold metallo-hydrolase -
  NSQ10_RS01920 (NSQ10_01920) - 358768..359184 (+) 417 WP_039176401.1 Lrp/AsnC family transcriptional regulator -
  NSQ10_RS01925 (NSQ10_01925) - 359213..360019 (+) 807 WP_039176402.1 AAC(3) family N-acetyltransferase -
  NSQ10_RS01930 (NSQ10_01930) - 360021..360407 (-) 387 WP_039176405.1 competence protein ComJ -
  NSQ10_RS01935 (NSQ10_01935) - 360528..362225 (-) 1698 WP_039176408.1 methyl-accepting chemotaxis protein -
  NSQ10_RS01940 (NSQ10_01940) nucA/comI 362353..362781 (-) 429 WP_039176411.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSQ10_RS01945 (NSQ10_01945) - 363149..365218 (+) 2070 WP_039176415.1 hydantoinase/oxoprolinase family protein -
  NSQ10_RS01950 (NSQ10_01950) - 365208..367196 (+) 1989 WP_339208853.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15971.96 Da        Isoelectric Point: 6.2215

>NTDB_id=965892 NSQ10_RS01940 WP_039176411.1 362353..362781(-) (nucA/comI) [Bacillus sp. FSL R5-0432]
MKLLKMILLLLLIVIGVATGYIQLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDRS
LHGIPTKRGYDRDEWPMAMCKEGGSGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=965892 NSQ10_RS01940 WP_039176411.1 362353..362781(-) (nucA/comI) [Bacillus sp. FSL R5-0432]
ATGAAACTTCTTAAAATGATTCTCTTGCTTTTATTGATTGTCATTGGTGTAGCAACAGGCTATATCCAACTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACCATTCATTTTCCATCAGACCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCGTCCATTTGTACAATTGACCGTAAACATAGTGATGAGCAGAGAGATCGATCA
CTACATGGCATTCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCAATGGCGATGTGCAAAGAAGGAGGCAGTGGAGC
TTCTGTCAAATATGTACGCCCTTCTGATAATAGAGGCGCAGGCTCGTGGGTTAGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATTCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.789

80.282

0.528

Multiple sequence alignment