Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NST56_RS08100 Genome accession   NZ_CP150195
Coordinates   1562257..1562721 (-) Length   154 a.a.
NCBI ID   WP_168747640.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1557257..1567721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS08080 (NST56_08080) kinA 1557509..1559329 (+) 1821 WP_168747635.1 sporulation histidine kinase KinA -
  NST56_RS08085 (NST56_08085) - 1559353..1560522 (-) 1170 WP_010334041.1 aminotransferase A -
  NST56_RS08090 (NST56_08090) - 1560724..1560885 (-) 162 WP_229148095.1 hypothetical protein -
  NST56_RS08095 (NST56_08095) cheV 1561093..1562004 (+) 912 WP_168747638.1 chemotaxis protein CheV -
  NST56_RS08100 (NST56_08100) kre 1562257..1562721 (-) 465 WP_168747640.1 YkyB family protein Regulator
  NST56_RS08105 (NST56_08105) - 1562846..1564138 (-) 1293 WP_010334045.1 MFS transporter -
  NST56_RS08110 (NST56_08110) - 1564214..1564708 (-) 495 WP_339182128.1 L,D-transpeptidase family protein -
  NST56_RS08115 (NST56_08115) - 1564766..1565626 (-) 861 WP_339181245.1 metallophosphoesterase -
  NST56_RS08120 (NST56_08120) fadH 1565771..1566535 (+) 765 WP_339181248.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17840.63 Da        Isoelectric Point: 10.4212

>NTDB_id=965837 NST56_RS08100 WP_168747640.1 1562257..1562721(-) (kre) [Bacillus sp. FSL R5-0560]
MDDHAYSKDLQPTVDNLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQQYVGMKEKPLVANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=965837 NST56_RS08100 WP_168747640.1 1562257..1562721(-) (kre) [Bacillus sp. FSL R5-0560]
ATGGACGACCATGCATACTCGAAAGATCTGCAGCCAACCGTAGATAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAGCAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAGTCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCAAAACACCTATTGCAACAATACGTCGGCATGAAAGAAAAGCCGCTTGTGG
CGAATCGCCAGCAGCCTGCATATCATAAGCCTGTCTTTAAGAAACTCGGCGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

97.403

100

0.974

Multiple sequence alignment