Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   AABJ90_RS03400 Genome accession   NZ_AP028964
Coordinates   667725..668438 (+) Length   237 a.a.
NCBI ID   WP_033883478.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 662725..673438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS03365 (BsubNA05_06560) yvcI 662971..663447 (+) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -
  AABJ90_RS03370 (BsubNA05_06570) rapZ 663472..664359 (+) 888 WP_003243903.1 RNase adapter RapZ -
  AABJ90_RS03375 (BsubNA05_06580) mgfK 664361..665314 (+) 954 WP_046161093.1 gluconeogenesis morphogenetic factor -
  AABJ90_RS03380 (BsubNA05_06590) whiA 665337..666287 (+) 951 WP_003243775.1 DNA-binding protein WhiA -
  AABJ90_RS03385 (BsubNA05_06600) crh 666311..666568 (+) 258 WP_003219835.1 HPr family phosphocarrier protein -
  AABJ90_RS03390 (BsubNA05_06610) yvcN 666569..667333 (+) 765 WP_161476673.1 arylamine N-acetyltransferase -
  AABJ90_RS03395 (BsubNA05_06620) - 667369..667578 (-) 210 WP_021480676.1 hypothetical protein -
  AABJ90_RS03400 (BsubNA05_06630) braR 667725..668438 (+) 714 WP_033883478.1 two-component system response regulator PsdR Regulator
  AABJ90_RS03405 (BsubNA05_06640) psdS 668432..669502 (+) 1071 WP_161476674.1 two-component sensor histidine kinase PsdS -
  AABJ90_RS03410 (BsubNA05_06650) psdA 669585..670364 (+) 780 WP_161476675.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  AABJ90_RS03415 (BsubNA05_06660) psdB 670339..672279 (+) 1941 WP_160221835.1 lantibiotic ABC transporter permease PsdB -
  AABJ90_RS03420 (BsubNA05_06670) yvcT 672316..673293 (-) 978 WP_080332215.1 D-glycerate dehydrogenase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27502.33 Da        Isoelectric Point: 4.6062

>NTDB_id=96583 AABJ90_RS03400 WP_033883478.1 667725..668438(+) (braR) [Bacillus subtilis strain NA05 = NBRC 116153]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSSRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=96583 AABJ90_RS03400 WP_033883478.1 667725..668438(+) (braR) [Bacillus subtilis strain NA05 = NBRC 116153]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAACCGTTCCATTTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATACTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAAAATGAGGCCGAATGGAACAGCTCCCGTATTCTGTTTTCTCAAAAA
GAATTTCAGCTTCTCTCTATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAACCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGCTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43

Multiple sequence alignment