Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NST56_RS01990 Genome accession   NZ_CP150195
Coordinates   369724..370161 (-) Length   145 a.a.
NCBI ID   WP_010332985.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 364724..375161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS01950 (NST56_01950) - 365141..365242 (+) 102 Protein_340 formaldehyde dehydrogenase -
  NST56_RS01955 (NST56_01955) - 365255..365710 (+) 456 WP_010332978.1 RDD family protein -
  NST56_RS01960 (NST56_01960) - 365791..366126 (+) 336 WP_010332980.1 YckD family protein -
  NST56_RS01965 (NST56_01965) - 366264..366683 (+) 420 WP_326191174.1 MarR family transcriptional regulator -
  NST56_RS01970 (NST56_01970) - 366674..367012 (+) 339 WP_326191173.1 DUF3147 family protein -
  NST56_RS01975 (NST56_01975) - 367029..367757 (+) 729 WP_339179593.1 AAA family ATPase -
  NST56_RS01980 (NST56_01980) - 367830..369263 (+) 1434 WP_339179596.1 family 1 glycosylhydrolase -
  NST56_RS01985 (NST56_01985) nin/comJ 369299..369697 (-) 399 WP_339179599.1 competence protein ComJ Regulator
  NST56_RS01990 (NST56_01990) nucA/comI 369724..370161 (-) 438 WP_010332985.1 DNA-entry nuclease Machinery gene
  NST56_RS01995 (NST56_01995) tlpC 370348..372072 (-) 1725 WP_339182038.1 methyl-accepting chemotaxis protein TlpC -
  NST56_RS02000 (NST56_02000) hxlB 372187..372744 (-) 558 WP_326191170.1 6-phospho-3-hexuloisomerase -
  NST56_RS02005 (NST56_02005) hxlA 372750..373382 (-) 633 WP_010332988.1 3-hexulose-6-phosphate synthase -
  NST56_RS02010 (NST56_02010) hxlR 373612..373974 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15987.71 Da        Isoelectric Point: 4.2036

>NTDB_id=965814 NST56_RS01990 WP_010332985.1 369724..370161(-) (nucA/comI) [Bacillus sp. FSL R5-0560]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDEQKTSQTEEYDETIAFPSERYPETANHIKDAISEGHSDVCTVDRDGAEERR
EQSLKDVPTKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=965814 NST56_RS01990 WP_010332985.1 369724..370161(-) (nucA/comI) [Bacillus sp. FSL R5-0560]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTTGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGAACAAAAAACGTCTCAAACAGAAGAATATGACGAAACAATAGCCTTCCCTTCTGAGCGTTATCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACTGTAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTGAAAGACGTACCTACCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGTGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGATGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

90.278

99.31

0.897

Multiple sequence alignment